RNA id: XR_006251601.1


Basic Information

Item Value
RNA id XR_006251601.1
length 369
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id LOC122350460
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11203829 ~ 11204547 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGACGTCAAGGAATGTAAAAGGGTTTGTTCaatgcataaatattgttttgaattcaaataatgaaaaatataatcatGTGTCTATTGTTTATAAGCGATTTATCAAGAAATCGAAGACCAAGTTTTTTTCAGTGGAAAGTTACCATGAATGGACCCGTGCCAACATCAACTACAGactagagtgtgtgtgtgtttctgttgacATGCAGTGCTATTCTGTTTATCATATAGCTAGTTGTAAAGCCCAATACCTCAATCTACTGCCTGTTCTGTTTTAATTGGAGACAATGTGACCTGATATCAGAAGAGGTGTATTGTTGCTCATTAAAGAATCCAAAAGTATCAAAGAACCTGAAGACTCCACAAA

Function

GO:

id name namespace
GO:0004520 endodeoxyribonuclease activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function

KEGG:

id description
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93119 lncRNA upstream 60733 10971712 ~ 11143096 (+) False G62896
TU93120 lncRNA upstream 60733 10971712 ~ 11143096 (+) True G62896
TU93122 lncRNA upstream 229863 10973247 ~ 10973966 (+) True G62897
TU93123 lncRNA upstream 229863 10973247 ~ 10973966 (+) False G62897
TU93081 lncRNA upstream 384412 10819217 ~ 10819417 (+) True G62873
TU93131 lncRNA downstream 39090 11243637 ~ 11248294 (+) True G62904
TU93265 lncRNA downstream 146764 11351311 ~ 11392665 (+) True G62996
TU93268 lncRNA downstream 146764 11351311 ~ 11394149 (+) False G62996
TU93322 lncRNA downstream 237891 11442438 ~ 11445008 (+) True plp2a
TU93325 lncRNA downstream 242486 11447033 ~ 11447271 (+) True G63024
XM_043246937.1 mRNA upstream 26 11199871 ~ 11203803 (+) True LOC122350458
XM_043246879.1 mRNA upstream 6026 11192724 ~ 11197803 (+) True LOC122350428
XM_043246880.1 mRNA upstream 16382 11184524 ~ 11187447 (+) False LOC122350429
XM_043246882.1 mRNA upstream 16382 11184597 ~ 11187447 (+) True LOC122350429
XM_043247866.1 mRNA upstream 20054 11173306 ~ 11183775 (+) True LOC122351035
XM_043246932.1 mRNA downstream 2655 11207202 ~ 11212312 (+) True tnfrsf14
XM_043246933.1 mRNA downstream 2655 11207202 ~ 11212312 (+) False tnfrsf14
XM_043246934.1 mRNA downstream 2655 11207202 ~ 11212312 (+) False tnfrsf14
XM_043246935.1 mRNA downstream 4682 11209229 ~ 11212312 (+) False tnfrsf14
XM_043246931.1 mRNA downstream 7911 11212458 ~ 11218643 (+) True LOC122350456
XR_006251600.1 other upstream 6026 11192724 ~ 11197803 (+) False LOC122350428
TU92799 other upstream 725030 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 763333 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 850716 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1498190 9704481 ~ 9705639 (+) True G62483
TU93183 other downstream 90258 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 357734 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 583806 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 593041 11797588 ~ 11797660 (+) True trnar-acg_41
XR_006251577.1 other downstream 612510 11817057 ~ 11820483 (+) False fance

Expression Profile