RNA id: XM_043246115.1


Basic Information

Item Value
RNA id XM_043246115.1
length 9239
RNA type mRNA
GC content 0.46
exon number 59
gene id LOC122349960
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10494888 ~ 10519569 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGTGCCATTGATTGTTTGAGCTTTCTCTCGATGGCAGCGTGGAGGGTGTTAGCGAGTCTCATCTGTATTCTTCCACGCGGTGCCTCCCCTACAGGCGTGTTTTGACTTGACAAAGTTACGCGTGCTTCCTGGTTTGAAGCACTATGACCTCAGGTACGCCGCGAAACTCCAACGAGTCCCTTCTGCGTCTCGGACTTTTGCGCTTGACATTCCCAGCTGCACATCCACCCCGGGATTCACTTTTGAAGGCTATCTTTCCTTTGCTCATTTTTCAACTCTACCGGGATGCATTTACACTTCAACTGTGGGTGAAGCGCGTGCCTACACCCGCTTTATCAGGAAGAGTTTGTAAGAAAAGTGTCCGGGCTTCTCCAGATCAGACGGACGCGTCCAGGCTCCTGCGTGCTGTAAATAGCAAAGATGTCCGATTCAGCGTCCAGTTTCCTGCACATAGGGGATATTGTCTCCCTGTATGCAGAAGGAACTGTCAATGGCTTCATAAGCACGTTGGGGCTGGTGGATGATCGTTGTGTCGTGGAGCCAGCAAGTGGAGATCTCGACAACCCTCCCAAAAAATTCagagACTGCCTCTTTAAGGTTTATCCCATGAACCGATATTCTGCCCAGAAACAATTCTGGAAGGCTAAACAGGCAAAACATGAAAAGGATAAGATTGGAGACATGGTGCTTCTTCAGAAATTGCAACATGCAGCTAATTTGGAACAAAAGCAGAATGAAGCCGAAAACAAAAAGGTCCACGGGGATGTGGTAAAATACGGCAGCGTCATTCAGCTCCTGCACATGAAGAGCAACAAGTATTTGACGGTGAATAAGCGTCTTCCAGCATTGCTGGAGAAGAACGCAATGCGTGTCACTCTTGATGGGACGGGAAATGAGGGATCCTGGCTTTTCATCCAACCTTTCTGGAAGCTCCGAGCCAATGGAGACAATGTTGTAGTTGGAGATAAGGTTATCCTGAATCCCGTGAATGCTGGACAGCCTCTCCATGCCAGTAGTTACGAGCTTCCCGATCACCCGGGGTGCAAAGAGATCAATTCAGTCAACAGCAACACCAGCTGGAAGATCAGTCTGTTTATGATGTTCAGTGACCATAAAGATGAAGTCCTTAAGGGAGGAGATGTGGTGAGGCTTTTCCACGCAGAACAGGAGAAGTTTCTGACCTGTGACGAGTACAAGGCTAAGCTTCATGTGTTCCTGCGCACGACTCTACGTCAGTCTGCTACTTCAGCCACCAGCTCCAATGCATTATGGGAGGTTGAGGTGGTTCACCATGATCCGTGTCGTGGAGGAGCAGGACATTGGAACAGCCTGTACCGGTTCAAACATTTGGCCACAGGAAACTATCTCGCCGCTGAAGAAAACCCTGGTTATAAAGAAAACAGCAATGACATAGAGGTGGACAGTAGCCGTATCAAGAGAAGCCTAGGAGAGAGGATAAAATACAAGCTGGCTGCAGTGCCTCATGGGAATGACATCGCCTCTCTGTTTGAGCTGGACCCCACCACACTGCAGAAGACAGATTCGTTTGTGCCACGAAATTCTTATGTTCGATTCCGTCATCTGTGCACGAACACTTGGATCCAAAGCACCAACATTCCCATTGACATTGATGAGGAGAGGCCTATTCGATTAATGCTGGGCACCTGCCCCACCAAAGAGGACAAGGAAGCCTTTGCCATTGTCTCTGTGCCAGTCATGGAGATTAGAGATCTAGACTTTGCAAATGATGCCAGCCTCATGTTGAGCACCGTCGTCGACAAGTTCAACTTCGGTTTCCTCAGTCCTAATGACAGAAGGTATGCCATTAAACTGCTGGAGGATGTGGTTTTCTTTGTCGTCGATCAGTTTAACAATGGCCAGCCAGCCCTGGAGGTGACGATGAACAAACCCAAccgagagagacagaaactCATGAGAGAGCAGAACATTCTCAAACAGATATTTGGGATCATTAAAGCCCCATTTAAAGAGAGGGACGCTGATCCGCCCCTGCTAACGTTGGATGAGCTGTCTGACCAGAAATACGCCCCTTATCAATACATGCTCAGACTGTGCTACAGGGTGCTGCGGCATTCACAAGAAGACTACCGTAAGAATCAGGAACACATAGCCAAGCAGTTTGGAATGATGCAGTCTCAGATCGGCTATGATATTCTGGCTGAGGACACCATCACAGCCCTGCTACACAACAATCGCAAACTGCTGGAGAAGCACATCACTAAAACCGAGGTGGAGACTTTCGTCAGTCTGGTTCGTAAGAACAGGGAGCCTAGGTTTCTGGATTATCTATCTGACTTGTGTGTGTCCAATAATGTTGCGATTCCAGTAACTCAAGAGCTGATCTGTAAATGTGTGCTGGATGCCAAAAACCAGGATATTCTCATGAAAACTGAgcGGCGAGCTGCTAAAGACACGCAGCACACCTCTGAGTATTTGGAAGAGTTTGGAGACGAGGATGAAGTTTGGCTGATCTGGTCTGAGAAGGAGAACGAGACCCATGAGAAGAGCATTCGACAGCTTGCCCAAGAAGCCCGGCAAGGGAATGTGCATGACGAAAACGTGCTGACATATTACAGgtACCAGCTCAAACTGTTTGCACGAATGTGTTTTGATCGCCAGTATCTGGCCATAGATGAGATCTCAAAGCAGCTGGATGTGGAGCTGATTTCCCTCTGCATGATGGACGAGACTCTTCCCTTTGACCTGCGGGCGTCTTTCTGTAGACTCATGCTACATGCTCACGTCGACCGTGACCCTCAGGAGCTTGTGACACCCATCAAATTTGCTCGTTTGTGGACCGAGATCCCCACATCTATCAGCATCAAAGATTATGACTCTCACTTGGACTATTCACGAGACAATAAAAAGAACAAGTTTGCCAACACAATGGCTTTTATGGAGGAGTACCTCAACAACGTTCTCATTGATGACCTACCTTTTGCCAATGAGGAGAAAAACAAGCTTACATATGAGGTGGTGAGTTTGGCGAGACATCTCATCTACTTTGGCTTCTACAGTTTTTTTGAGCTTTTGAGGTTGACTCGCACTCTTCTAGGAATCATAGACTGCACTCCGAGTAATGCTAACATCAATCCAATGTTTAGCGATGATGGCAGTGGTAAGAATGTCAGGCGATCCATTCATGGCATGGGGCAGATGATGTCTACCATGGTCCTAAACCGCAAGCCATCCCTGTTCTCCACCCCTGGTCGCCCTCTAGACAGCCAGGCTGGCAGTAAAGATAGCATTGACACACAGGACATCACTGTCATGGACACCAAACTGAAGATCCTGGAGATATTACAGTTCATCCTCAGTGTACGCCTGGACTATCGGCTTTCCTTCCTGCTCTCAGTCTTTAAGAAGGAGTTTGTGGATGTCTATCCTATGGGTGATGCAGATGCAACACATCACACGGAGCATGAGGAGCCTCGTTCTGctTCCATCAACCTCCAGCACATTGGAGAGCAGGCAGAGGCCATGTTTGGAATTGGTAAAGGAAACAGCATTCTGGAAGTGGACGATGAAGGGGGACGAATGTTTCTGCGTGTTCTGGTCCACCTCATCATGCACGACTACCCTCCGCTGGTTTCTGGGGCCTTGCAGTTACTATTCAAGCATTTCAGTCAAAGACAAGAAGTCCTCCACACCTTTAAACAGGTCCAACTTCTCATTTCAACTCAGGATGTTGACAATTACAAACACATAAAACGAGATCTGGATCTTCTGCGCACCATGGTGGAGAAGTCTGAGCTTTGggtcataaaaaaaagtacttcGGGGGGAGATGGgaagaaagacaagaaagaCAAGAAggacaaaaaagacaaaaaagaggCTGTGCCAGCACCTGTGGAGGAGGACACTGATACAAAAAAGCAGAAGGTTGAAAAGAGCAATGAAAGTTACCAGAATGTCAAAGAGATTTTAGAGCgtttgaataaaatgtgcaGCTCAGGTGTATTTAAGAAACAACAAAGACTACTGAAGAACATGGGTGCCCACAAAGTTATGCTTGACCTGCTTCAGATCTCCTATGATAGGAATGACACCAAAATGCAGGAGATCATCAAGTACACACACCTGTTCTTACAGAAGTTCTGCACAGGGAATCTGGAGAACCAAAACCTCCTCCATAAACACCTCAACCTTTTTCTCACGCCTGGGcTCCTAGAGGCAGAAACAATGCAGCACATTTTCAGTAATAATTACCAGCTCTGTTCTGAGATCAGCGAGTCTGTGCTGCATCATTTCATCCACTGCCTGGCCACACATGGCCGGCACATTCAGTACCTCAACTTTCTGCACACCATCATTAAAGCAGAAGGCAAATACGTGAAGAAATGTCAAGACATGATCATGACTGAGctAACAAGTGCGGGTGATGATGTGGTCGTCTTCTACAACGATGATACGTCATTTGACACTATGGTGGAACTGATGACCCAGTCTCGGGAAGGGGTGAAGGACGACAGCCCTCTGCGGTACCATATCTCTCTGGTAGAGCTGCTGGCTGCATGTGCTGAAGGCAAAAATGTCTACACTGAGATTAAGTGCACATCTCTGCTGCCCCTGGAGGACATGGTGAAAGTAATAACACATGAAGACTGTATCACAGAGGTGAAAATTGCGTATGTAAACTTCGTGAACCACTGCTATGTAGACACAGAAGTAGAGATGAAAGAGATCTACACCAGCAACCACATCTGGAAGCTGTTTGACAACTTCACTGTAGATATGGCAAGGGTGTGCTCCAATCGTGAGAAACGCATGTCTGACCCTGTGCTCGAGAAGTATGTGATTCAAGTGGTTTTAGACACTATAAATGCCTTCTTCAGCTCTCCcttttcagagaacagcaccaGCACAGAGGCTCATCATACCATTGTGAAGCAGCTGCTGCAGTCTACCATGCGTCTATTAGATTGTCCCTGGCTACAGCCACAACAAAAAGTCCAAGTAGAGTCCTGCATCCGAACTCTCGCGATGACAACAAAGAGTCGCTCCATCCCTCTGCCGGTAGAGCTGGAGGCTCATGTCAATATGATGTTGAGTCACAGTAATGCCCTCACGCTGTCTCGCTCCAGCCAAAGCAACAAAAGCCTGTCACGCCTCACACGGCCTGCTGCTCCCACCAACCCCTGGGACTACAAAAACATCATTGAGAAACTGCAGGATATCATTAACACGCTGGAGGAGCGAGTGATGCCGTTGGTTAATGCAGAGCTGTCAGTGCTGGTGGATGTGCTGCACCAGCCCGAGCTGTTGTTCTTGGAAGGCACAGATGCTCGATCGCGCTGTGAATCAGGAGGCTTCATATCTAAACTGATCCAGCACACAAAGGCCCTCATGAATTCGGATGAGAAGCTCTGTATCAAAGTGCTCAGAACTCTACAGGAAATGCTCATTCGGGAGCTAGACTTTGATGAGAAAGGCTTTGCCTTAAGAAAGGTGTTGCTCCAGAACTACctctacaacaacaaaaagaacatCAAAGCGGAGCTTGTTGAACATGGAGGAGgtggagagggagagagagactggCTGGCTGTTGCAGCATTACAGTGTCGTCTGGACAAAGAAGGTGGCACCAAACTCTTCATAGACCTTATAACCAGCACTAAGAACGAGAAGATCTTTCAGGAGAGCATTCAGCTCGCTATCTGTCTGCTGGAAGGAGGTAACACGGAGATCCAGAACTCCTTTTACAAAATCATGATGGGAGACAACAAGTCAGAAAagttttttaaagtattaaatgaCCGCATGAATAACGCACAGCTGGACATCAAATCCACTATATCCGTCAACGTAGGGGAAATGAGCAATAAAGCCAAAGATGACAAAGATATGGATACAGGTGCAGGGATGTCCTTTGGCCAACCTGAGCAGCCACCTCAACCTGAGCAGCAGGAAGTAGAAACAGAAATGGGCCCCTCCGTCACCATCATGAAACCCATCCTGCGCTTTTTACAGCTGCTCTGTGAGAACCACAATCAGGATCTTCAGAATTTTCTTCGCTCTCAgagcaataaaacaaattataaccTGGTTTGTGAGACGCTCCAGTTTCTGGACATCATGTGCGGAAGCACAACAGGAGGGCTGGGACTGCTGGGCCTTTATATCAATGAGAACAACGTGGAGCTCATCACACAGACCCTGGAGACCCTCACAGAGTACTGCCAAGGACCATGCCAAGAGAACCAGACATGCATTGTCTCTCATGAGTGCAACGGCATTGACATCATCACAGCCTTGATTCTGAATGACATCAGTCCTCTCTGTCGTTACCGTATGGAGCTAGTGCTGCAGCTCAAGGACAACGCCTCTAAGCTCTTGCTGGCTTTGATGGAGAGTCGTCATGACAGTGAGAATGCAGAGAGAATCTTGTTTAACCTTCGACCCCGGGAACTGGTGGAGGTGATAAAAAAGGCTTACCAACAAGAAGCTGAGAATGAGGACGGAGAAGTTTCACCTCTGGAAGTTGGACACAACATCTACATCCTGGCATTACAGCTTGCCCGGCACAACAAAATGCTCATCACACTGCTTAAACCTCAAAAGAAGACAAAAGAGGAAGGAGAGGAAAGCATCTCTTCTATgCTCACCTTGAACAAACAGCAGGAGGAGCCACAGGAGGATCCATTAGAGTACTATGACCGTCAAACGGCGCAGATtgagATTGTGCGGGAGGACCGTAGCATGGAGCAGATAGTGTTTCCTGTTCACCCCATCTGCGAGTTCCTGACGGAGGAGTCAAAGTTCCGCGTGTTTACCACCACAGAGCAGGACGAGCAGGGCAGCAAGGTCACACACTTTTTCGATCAGACCTCTTTCCTGCACAATGAAATGGAATGGCAGAAAAAACTTCGAAGCATGCCGGTGCTGTACTGGTTCTCTCGTCGAATGTCTCTCTGGGGCACCATATCATTCAATCTGGCTGTGTTTATCAATCTTATCATTGCTTTGTTCTACCCACATGACTCTGGTCGTGCTGGTGCAATAGATACTTCGTTGCTGCTTATGCTGTTCTGGTGCTTCGCTGGACTGGCTGTTTTGGGCCTGTTATCCAAGCGCTATGGGTTCCAGTCCCTCACCGTCGCCATCACCCTGCGCTGCATCTATCACTTCGGCATCGGGCCAACTCTCATTCTGCTGGGGGCGCTCAATctGATCAATAAGATAGTGTTTGTGGTGAGCTTTGTGGGGAACAACGGCACCTTCATCATGGGCTATAAAGCCATGGTGATGGATGTAGAGTTCCTGTACCACCTGGCCTATGTATTAACCAGCACTTTGGGGCTTTTTGTCCATGAGCTCTTCTACAGCATATTGCTGTTTGATCTGATCTACCGTGAGGAGACGCTCTTTAATGTCATCAAAAGTGTGACACGTAACGGTCGCTCTATTCTCCTCACCGCTGTCTTGGCCATCATCCTGGTCTACCTCTTCTCTATCGTGGGCTTCCTCTTCCTCAGGAATGACTTCATTATGGAAGTTGACCGGCTTGCTAGCTCAGATGCAGATGACTCTATGAGCAGCTGCAGTGCAGATGGAGTAGAATGCACAGAGGAAACTGGATTGGTTGCACCATCAGAAGAAGATGAGGACAACACAGAGAGAGCATGTGACACTCTTCTAATGTGTATCGTCACGGTGCTGAATCATGGGCTGAGGAACGGAGGAGGTGTTGGAGATGTTCTGCGCAAACCCTCTAAGAATGAGCCTTTGTTCCCTGCCCGTGTGGTATATGACCTTCTCTTCTACTTCATTGTCATCATCATTGTTCTCAACTTGATTTTTGGTGTAATTATTGACACCTTTGCTGACCTGCgtagtgaaaaacaaaagaaagaggaGATACTGAAGACCACCTGTTTCATTTGTGGTCTCGAGAGGGACAAGTTTGATAATAAGACTGTATCATTCGAGGAACACATTAAATTTGAGCATAACATCTGGCACTACCTCTACTTCATTGTGCTGGTACGAGAGAAAAACAAGACCGATTACACTGGCCCAGAGAGCTACGTGGCCCATATGATAAagAATAAGAACCTGGATTGGTTCCCACGCATGCAGGCCATGTCTCTGGTCGTAACTGATGGAGATGGAGAACAGAATGAGATGAGGAACCTGCAGGATCGTCTCACCTCCACCATGAAAGTGGTCACGCAGCTCACAAGCCAATTAACAGAGCTCAAAGAACAGATGACGGAGCAAAGGAAGAGAAGGCAGAGGATGGGTTTTGTGGATGTTCAGTCTGGCTCAAACCCCGGAGTGCCTATGCCTCCGAGTGCTGCTGGAGGAAATCTTCAAGTCATCAAGACCTAATTTTTCCAGCTAACCTTGCATTGACTTTATAGAAGCAATAATGTGACAACGGTGTACTCCTCACTGTGGAACAGATGCGTTCAAAGGGATAGACAGATTGGATCTACGCTCCCACAAAAGCACTACTGACTGAATAGTCATTCTTTGAGGGGCCTTTGATTTACCTGAATGGTTTTAGTGTGCAcaaatttgatatattttattttatttaaattttttagtttttggttaGGATATTCGAAAGCTTGTTTTCAAAACTTGTTGGATGTGTGGATAAATGTAGCATTACCTCAAGTAAAGCTGATGTGTTTTAGGTTGTAGGTTAATGCAGTTGGATGGTTTTAATATGTACAGATTTTACATGCTGTATTTATAGGGATAGGGCAGTCATGATACACTGGCTTGATATGAAAGGACCAGTCTTATGATGAACTAGGAGATGGCAACATGTCACGGTTGAATCTGGGAAATATAAAAGCCGCAATGTGCATAAGTGTGTTTAGAGTTCATAcagctttaatttaatatttttaaaaaaatgactcgAACATAACTTTTGCTCAGGAAACTAACGCGTTCTTGTctatcataaaaatacagtcttAAGTGAGGTCGTGCTTATCACGGTTTTAATAGACATAATGCATGTATATCTATGTATGTgtctatttaattatttattgtgcaaCTAAGACCAAGTTGtgaatcatttgcatttttatgccCACAAAAAGAATGCTGGAACATACTTTTACCTATATTGTAATTAATCAATGCTAATGACATCAAATAATCCTCAATTTGTTGTTGCTAATGTGTTGAAACGAAGTGCCTCTACAACTTTACACAAAATacgaaataaaacatttgtgttattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92803 lncRNA upstream 10289 10445678 ~ 10484599 (+) True G62693
TU92876 lncRNA upstream 72326 10421853 ~ 10422562 (+) True G62739
TU92868 lncRNA upstream 152685 10341953 ~ 10342203 (+) True G62733
TU92867 lncRNA upstream 156219 10338105 ~ 10338669 (+) True G62732
TU92794 lncRNA upstream 202668 10262789 ~ 10292220 (+) False G62691
TU92880 lncRNA downstream 7410 10526979 ~ 10530687 (+) True G62743
TU93047 lncRNA downstream 29633 10549202 ~ 10549414 (+) False fhad1
TU93076 lncRNA downstream 280124 10799693 ~ 10799975 (+) True G62868
TU93081 lncRNA downstream 299648 10819217 ~ 10819417 (+) True G62873
TU93119 lncRNA downstream 452143 10971712 ~ 11143096 (+) False G62896
XM_043246627.1 mRNA upstream 108800 10370327 ~ 10386088 (+) True cry3a
XM_043246628.1 mRNA upstream 108800 10370327 ~ 10386088 (+) False cry3a
XM_043246629.1 mRNA upstream 108800 10370327 ~ 10386088 (+) False cry3a
XM_043246630.1 mRNA upstream 108800 10370327 ~ 10386088 (+) False cry3a
XM_043246631.1 mRNA upstream 127025 10348914 ~ 10367863 (+) True col2a1a
XM_043246119.1 mRNA downstream 126 10519695 ~ 10526070 (+) True alas2
XM_043246121.1 mRNA downstream 14168 10533737 ~ 10535560 (+) True LOC122349965
XM_043246117.1 mRNA downstream 16574 10536143 ~ 10551791 (+) True fhad1
XM_043246118.1 mRNA downstream 16574 10536143 ~ 10551791 (+) False fhad1
XM_043247927.1 mRNA downstream 33332 10552901 ~ 10557260 (+) True LOC122351073
TU92799 other upstream 16089 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 54392 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 141775 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 789249 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 2965820 7524635 ~ 7529068 (+) False soat1
XR_006251600.1 other downstream 673155 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 775236 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 1042712 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 1268784 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 1278019 11797588 ~ 11797660 (+) True trnar-acg_41

Expression Profile