RNA id: XM_043247927.1


Basic Information

Item Value
RNA id XM_043247927.1
length 1136
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC122351073
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10552901 ~ 10557260 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attttaaatattaccattatattcataccatttatacaaatatgaaaaaaaaccagttaaaaaaataataataataacttcaGCTCCGTCTGCCTGCTTTAGACCTTGTTAATTGGACAATGTGCCGGATTCTGAACATCCTGCTGGCTCTTCTGAGTCGCTTTCTTTTTGCGGTGCATGGCATCCTGACGGTGTGGCGTGTGGTGGAGGTGACAGGCGAGCCCTCCTATTGGCTGCTGCTGACGGGTGTGGCACTGCTGGGGGTAGAGATGGCCATCACCATCAAATACACACGCAATGCTGAATGGAAATGGTTCTCACCTATGGTGTTTCTATATCTGAGCACTGTGATTCCCTCGGTCTGGTTCCTGGAACTGAACCTCCTACAGTCCAATTTGCCCATCAACTCCAGCACAAACTCTGACCCGCAATTCTTCTCCCAGATCGCGCTAACAACGggGTTGGCAGAACTTGATCCTGAGAACTGGGTGGAGGCTCTTGAGCAGACCATGCTGATCGTTTTGGTTCTGGGCCGCTGGCTGATGCCGAAGGGTGACATGTCACGTGACCAGCTATCCCAGCTCCTTATGGTTTACGTGGGGCTTGGAGCGGATATCCTGGACATATTTGACACGTTTAAGGAGCCACAAGTGAAGACCAAGCAGGCCGTGATTATTGTTGGGCTAAGTTTGTTCTCCTGGGCCTTGATGCAGTTTCCTCTTGTTCTTACCCAGACCAGCCGGCCCAAGGTCCAGGTGGAGGATCAGTCAGAGACCGCCCAGCTGGGGCGAGCTGGCTTGACAGTTTCCTGCTGCTCCAGTGAAGTCTGGAGTCTTCTGCTAACGGTGGGTCTGCAGGATGGACCATTCCTGATTTACCGCCTGTACCTCATGATACGTGAGAATGTTCTGAACCAGCTGATGATCTTCTTCACGTGCAAAAATATCCTAATTGTTTTGCTGGAGGTCTACAGGATCTGTGTTATCCACTTTGAGCAGAGCAATCTGAGAAGTGGAACTGAGTCATGTGACCCATCTCATGAACATTCAGAATGGACTGATGGAGAAGCTATAGAATCCAGCTGTCAGGAATAGATTATATTCACACTTAATGAAAATACTGTCTGTATTTTGAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93047 lncRNA upstream 3487 10549202 ~ 10549414 (+) False fhad1
TU92880 lncRNA upstream 22214 10526979 ~ 10530687 (+) True G62743
TU92803 lncRNA upstream 68302 10445678 ~ 10484599 (+) True G62693
TU92876 lncRNA upstream 130339 10421853 ~ 10422562 (+) True G62739
TU92868 lncRNA upstream 210698 10341953 ~ 10342203 (+) True G62733
TU93076 lncRNA downstream 242433 10799693 ~ 10799975 (+) True G62868
TU93081 lncRNA downstream 261957 10819217 ~ 10819417 (+) True G62873
TU93119 lncRNA downstream 414452 10971712 ~ 11143096 (+) False G62896
TU93120 lncRNA downstream 414452 10971712 ~ 11143096 (+) True G62896
TU93122 lncRNA downstream 415987 10973247 ~ 10973966 (+) True G62897
XM_043246117.1 mRNA upstream 1110 10536143 ~ 10551791 (+) True fhad1
XM_043246118.1 mRNA upstream 1110 10536143 ~ 10551791 (+) False fhad1
XM_043246121.1 mRNA upstream 17341 10533737 ~ 10535560 (+) True LOC122349965
XM_043246119.1 mRNA upstream 26831 10519695 ~ 10526070 (+) True alas2
XM_043246115.1 mRNA upstream 33332 10494888 ~ 10519569 (+) False LOC122349960
XM_043247894.1 mRNA downstream 102141 10659401 ~ 10705542 (+) True LOC122351050
XM_043246749.1 mRNA downstream 404928 10962188 ~ 10964723 (+) True dffb
XM_043246748.1 mRNA downstream 410799 10968059 ~ 10970769 (+) True b3gnt7l
XM_043247374.1 mRNA downstream 434244 10991504 ~ 11027837 (+) True LOC122350694
XM_043247979.1 mRNA downstream 603475 11160735 ~ 11166133 (+) True LOC122351105
TU92799 other upstream 74102 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 112405 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 199788 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 847262 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 3023833 7524635 ~ 7529068 (+) False soat1
XR_006251600.1 other downstream 635464 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 737545 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 1005021 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 1231093 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 1240328 11797588 ~ 11797660 (+) True trnar-acg_41

Expression Profile