RNA id: XM_043246121.1



Basic Information


Item Value
RNA id XM_043246121.1
length 1003
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC122349965
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10533737 ~ 10535560 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AATGCTATCGGTGCTTTGCAAAAGGAAATGTAACAGCTTTGAGTTGCTGTCCAGGTCCAGGTTAGTTATATAAGTGACGGGTATTTGCCTGTAACTATTGCAATCAGGCATCATGAAATTTGTGATCTTGGCTCTGTTCATTGCTGGCGCCTACGGTTGTGGGCAGCCCACCTATAAACCTGTCGCCTCAAGGGTGGTGGGTGGAACTGATGTTAAACCAAACAGCTGGCCATGGCAGGTGTCCCTCCAGTACCAGAGCGGCTCCAGCTTTTACCACACTTGTGGTGGCACCCTGATCGATAAGCAGTGGGTTTTGACTGCTGCTCATTGCATCGGCAGCCGCACTTACAGAGTGTACCTGGGCAAGCACAACCTGGCACTCAGCAGTGAGTCCGGCTCTCTCGCCATCTCTCCTTCCAGGATTATCGTGCACGAGAACTGGGATTCCTACAATATCCGCAATGACATTGCTCTGATCAAGTTGTCGAGTCCAGTGACTTTCACTGACAAGATTTCACCTGCTTGCCTGCCTGATTCCGGCAGCATTCTGCCACACAACTTCTCTTGTTATGTCACTGGCTGGGGACGCCTCTGGAcCAACGGCCCCATTGCTGATATCCTGCAGCAAGCTCTGCTCCCTGTTGTGGACTACAATACCTGCACTAAATCTGACTGGTGGGGCAATCTTGTGACCAACCTCATGGTGTGCGCTGGTGGAGACGGAGTCGTGTCCAGCTGCAATGGTGATTCTGGTGGCCCTCTGAACTGCCAGGGAAGTGACGGCACCTGGGATGTGCATGGTATTGTGAGTTTTGGCTCCAGCTTGGGCTGCAACTACCCCAAAAAGCCCTCCGTCTTCACCCGTGTGTCTGGCTACATTTCCTGGATCAACAATGTGATGACCTCTTATTAAAGTGCGAAAGGTGTGGTTCAACACAAAatcaacacaacaacaacaataacaaaagaaatgTGGAATCAATAAACAGATTTATTCAACAAC

Function


GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01346 CELA2; pancreatic elastase II

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92880 lncRNA upstream 3050 10526979 ~ 10530687 (+) True G62743
TU92803 lncRNA upstream 49138 10445678 ~ 10484599 (+) True G62693
TU92876 lncRNA upstream 111175 10421853 ~ 10422562 (+) True G62739
TU92868 lncRNA upstream 191534 10341953 ~ 10342203 (+) True G62733
TU92867 lncRNA upstream 195068 10338105 ~ 10338669 (+) True G62732
TU93047 lncRNA downstream 13642 10549202 ~ 10549414 (+) False fhad1
TU93076 lncRNA downstream 264133 10799693 ~ 10799975 (+) True G62868
TU93081 lncRNA downstream 283657 10819217 ~ 10819417 (+) True G62873
TU93119 lncRNA downstream 436152 10971712 ~ 11143096 (+) False G62896
TU93120 lncRNA downstream 436152 10971712 ~ 11143096 (+) True G62896
XM_043246119.1 mRNA upstream 7667 10519695 ~ 10526070 (+) True alas2
XM_043246112.1 mRNA upstream 14168 10494888 ~ 10519569 (+) True LOC122349960
XM_043246117.1 mRNA downstream 583 10536143 ~ 10551791 (+) True fhad1
XM_043246118.1 mRNA downstream 583 10536143 ~ 10551791 (+) False fhad1
XM_043247927.1 mRNA downstream 17341 10552901 ~ 10557260 (+) True LOC122351073
XM_043247894.1 mRNA downstream 123841 10659401 ~ 10705542 (+) True LOC122351050
XM_043246749.1 mRNA downstream 426628 10962188 ~ 10964723 (+) True dffb
TU92799 other upstream 54938 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 93241 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 180624 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 828098 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 3004669 7524635 ~ 7529068 (+) False soat1
XR_006251600.1 other downstream 657164 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 759245 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 1026721 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 1252793 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 1262028 11797588 ~ 11797660 (+) True trnar-acg_41

Expression Profile