RNA id: XM_043246749.1


Basic Information

Item Value
RNA id XM_043246749.1
length 1533
RNA type mRNA
GC content 0.41
exon number 7
gene id dffb
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10962188 ~ 10964723 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGACATCCGGCGAAAGAGAAACTCTTCGTATTTGCGGAAAAGAAAATATGCGCAAAGTAACAAAACACAAGTTGGTTAAAATAAGAAGCGCCAACGAGGCCAGAAAATACGGAATTGCGGCTACTAACCTGAAGGAGCTGGTTAAAAAAGCATGTAGTTTACTTAAGGTATCCAACTCCAAAGTACATGTGTGCTTATTCGAGGACGGAACAGTAGTTACTGAAGAGTATTTTCAAAATCTTCCTGATAACACTGAACTTGTCCTCCTGCCTGAGGGACAGAGCTGGAATGGACTTGTTCATGACATAAATCAAGTCCTGGGTTTGGACAGAGGCGCAGACCTGATCCGTGCAGCCAGAGATCTTCTGTCAGATGAACGTTCTCCCAAACGGCGCAGAATACTGGGAGACCTTCTGAGGAACCTGACTGACAATTCAGAGGTGGAGAACAGAGAAGATGATAAGGAATGGTTTGAAGGAATCGATGCCCGGTTTAAAACCAAGTCTGCGTACATGAAGTATAACTGTGAGAGCAGAATCCGAGGATATTTGAAAGAGGTTGATGGATATACGCAGACTATTCCAAATGCCAAGACAAAAAGTGAATATAAAAAGGTGGTGGGGATCCTGGCAGAGAAGCTGAAGGCGGCACGGTATAATGGCACATATTTTGACAGATCAGAGAGGGACGACCACAGACTCTGCACTGAGGAGGGCTGGTTTACCTGCCAGGGCGCATTTGACGAGAGCAACTGCGTGTTTCTTCACTCAATAAACCCATACGGGAGCCGCGAGAGCAGAATCCTCTTCAGCACCTGGAATCTAGACCACCTgataGAAAAGAAGAGGACAGTCATCCCCACGCTCGCCGAGGCACTGAAGGGCAATAAGAGCGGCCATATAAACGTGGATTATTTTTACAAACTGTTATTCACAAGGGAAAATCTCAAGCTCGTTCATATCGTCTGCCACAAGAAAGGGGCCCATGAGCTCAGCTGTGACTCCCGAAAAATCTACAAACGGGTCAGGAGGATTGTGAAATGAAAGCATGTCCGTAATCCTCTTATGAAATGTGCTGCTTGGTGTGAAAGTTTCAAGCACTGAGATCCTCAgggccattttattttattatgaggTTATATAGCGTTTCAggtatacactttttttaattgtatctTTTAGTTTCGGCTATAAACCAATTTTTGtaccaaagcaacattttttcaGGGTTTTTATAACTGTGACTGATTTTATATGCaagttttattgatttatatttagcACTAAATGTCTTTGAGTCACGTGTTTAATCTTGTACAGTTAATGTTACACATAGCACTTCCATCAACAAACAGTAGCCTTactgtacaaaatataaatcaagAGATGTTTTCCAAAGCTGTTAATGAGATTTATTTTCTCTGGACGGAGTATTGTAGCTTTCACATGATAATACACGGATGATTTGCCATTAAATAAGTTCACGAAAAATTGCATgtcatatacataaagtattTGGTAGCAAAACAAA

Function

GO:

id name namespace
GO:0006309 apoptotic DNA fragmentation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004536 deoxyribonuclease activity molecular_function

KEGG:

id description
K02311 DFFB, DFF40; DNA fragmentation factor, 40 kD, beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93081 lncRNA upstream 142771 10819217 ~ 10819417 (+) True G62873
TU93076 lncRNA upstream 162213 10799693 ~ 10799975 (+) True G62868
TU93047 lncRNA upstream 412774 10549202 ~ 10549414 (+) False fhad1
TU92880 lncRNA upstream 431501 10526979 ~ 10530687 (+) True G62743
TU92803 lncRNA upstream 477589 10445678 ~ 10484599 (+) True G62693
TU93119 lncRNA downstream 6989 10971712 ~ 11143096 (+) False G62896
TU93120 lncRNA downstream 6989 10971712 ~ 11143096 (+) True G62896
TU93122 lncRNA downstream 8524 10973247 ~ 10973966 (+) True G62897
TU93123 lncRNA downstream 8524 10973247 ~ 10973966 (+) False G62897
TU93134 lncRNA downstream 191295 11156018 ~ 11248294 (+) False G62904
XM_043247894.1 mRNA upstream 256646 10659401 ~ 10705542 (+) True LOC122351050
XM_043247927.1 mRNA upstream 404928 10552901 ~ 10557260 (+) True LOC122351073
XM_043246117.1 mRNA upstream 410397 10536143 ~ 10551791 (+) True fhad1
XM_043246118.1 mRNA upstream 410397 10536143 ~ 10551791 (+) False fhad1
XM_043246121.1 mRNA upstream 426628 10533737 ~ 10535560 (+) True LOC122349965
XM_043246748.1 mRNA downstream 3336 10968059 ~ 10970769 (+) True b3gnt7l
XM_043247374.1 mRNA downstream 26781 10991504 ~ 11027837 (+) True LOC122350694
XM_043247979.1 mRNA downstream 196012 11160735 ~ 11166133 (+) True LOC122351105
XM_043246234.1 mRNA downstream 204879 11169602 ~ 11172533 (+) True mad2l2
XM_043247866.1 mRNA downstream 208583 11173306 ~ 11183775 (+) True LOC122351035
TU92799 other upstream 483389 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 521692 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 609075 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1256549 9704481 ~ 9705639 (+) True G62483
TU91548 other upstream 3433120 7524635 ~ 7529068 (+) False soat1
XR_006251600.1 other downstream 228001 11192724 ~ 11197803 (+) False LOC122350428
TU93183 other downstream 330082 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 597558 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 823630 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 832865 11797588 ~ 11797660 (+) True trnar-acg_41

Expression Profile