RNA id: XM_043246618.1


Basic Information

Item Value
RNA id XM_043246618.1
length 6277
RNA type mRNA
GC content 0.45
exon number 8
gene id pdzd4
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11258547 ~ 11284209 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGCAGGCAACAAAGACCCGAGTGCAGAGCTGCTTCCAATACAggtgacagagagaaaaagagagagacagcggAGAGGGGCTGGGAAATAAGATATGAGGGAAGCAGGAAAGGAAGGTGGGAGGGTGACGCTATCACCTATAAGTACAAGAGAGAGTGAgcaagggagagagagagagagagagagagagagagagagagagagagagagatgagagctGGCTGAATATTGGCTGGTATTGCCGGGAGAGGAGGGGCCTGCTGTAAAGCTGTAATGGGCTCCAGCTTGTGCAGTGGTGCCGATCCCCACGTTTCCTCCAACCCAGCAGCTTTTCCTCTCTCTGCAGACACACATGTACGTGCGCTGGGCTGGCGTCGATCCAGGAGAGCCTTGAGACGTTCTCGAACGGATTTTTCAGATTCACCATCCCACCATCAGACTGAatgactttgtttttctttttggaaacGCACAGCTCcacttcattcatcttcaaacGCTCGAGCAAGCTGGATTACGTCCCAAATCTCCAGCCGCGAGGAGCAGAAACATAAGGGAACATCATTAGCAGTGGTCTAATACGtactttaaagcttttttttttatatcccgAGGCTCTGAAGCCGGGCAGATGTGGGGCAGCGTTCAATTCATTCCTTGCTGAAGATCAGACACTTCCCCTTCACCCCTTTCAATCATCCTTCCATCAGGCGATAGAGAGAACAGCCCTTGCAGACTGACATACTGTTTGGAGAAAGAGCTGAGCTCACCTCGGTAGTACGAGAGAGACACGATCTGACAGGTGCACTCTCTCATTCCTTTTCTGCCATGAACACACAGCTGGAATTCCGGGAAGAAAGGAAGAGGACTGGTTTGATGTGATCTGTGAACGACAGGCTCTTATCTGCAAAGTGAGTGCAAATGAGCGGTGGGATTACAACCTCACTTTATAGAGGACAAGGAAAAGATGATGACACGGTCATAGAGCGCTTATGTAGATAAATACATGCAGGTGTCAAATACAACATGCTGTGGAGAGGGAATATGAAATTAGGCATGGCACCAGACTTGCGGTTATAATAACGGCTAATGAACATCTGCATTGAAATTGTCATCATAATTAAGGATGGAACGGAAATATTCAAGTCTACAATCGGAGTAGGCACTAGTTACAGACTCGAGCAAcatgttttaaagcacttcaaATAGCATGACGTGCACGCCTGCGCCTAGAGAGCGTTGTTATATGTAAATGAAGGAAACAAGCTCTCTAATAATAGAATCGGAGTGTGAAGGAAAGCATCTCTCAGGGGAATACGGAGCGGCGGAaagtaaacatttgtttattgcatcttttatttaataattcatatctTAGTCTACGACTTTGGCGGAGGCACCAGGGAGTTCACGTTAGGCAGATCATCTCTTTGATGATACTGTTCAGACACGGTGGGATCTGTAAATTTAATCCTGTCACACCGTGCTGCTGGCTGCTTGTTTCAAGCCTTGTTTCAATACCATCCGTCTAATAACATATCTGATTCGCATCATCATACGTGAAGTTTTAAAGccaaaaacattaaactaaCTTCACTGAGTGTGTAGGAAATTCAAAGCTGAGTATAAAAGCACACAGACATCAGAGGCTCCATTCATCAGCGATCAAACCCTGACTTTCTCACGGCTGGATGCTGCAGCGTCTCTGATCCTGTTTCCCGGGTTGGACCTCAATTAAAACAGCAGCCGGGCCTGAATGAGGGAAGCAGACAAAGAAAAGAACATCAAAGCCCTTTCATGGAGTGCAGAGTCTTAACCTCTGATCTTAGGGAGGGATTACTGTAATTGGACGGCAGGGATCGACACCTACGTCGGAGAATCAGGAAGCGAAGAGCATCGAGGAATCGCACCCCCTCAGGAAACCACAAGCCACGATGGGCTGCAACATGTGTGTGGTGAACAGGCCGGAGGAACAGTACAGGATTATGTTTCAGAAAGGAAACACTCTGCGTCCCATTGATGCAGAAGTAAAGCTCAAAGGCAGAAGAACATCTCATCTGTCCCAGGACAAAGATGGGCAGCCTCATGATCCTCTGCTTCTTCAAGTGGTATGTAAGGGTCACAGGAGAAGATTGGGTGCAGCCGCTGGCACACCTCGGCTCATGGCTATCACAGACTGTGTGGACAACGGCACCCAGACCGACATCAGCTTCCAAAACTTCTTGAATGGGGACAGAGGATCTTACCCAAGCAGTGGATCACCTGTGCCTCCACCCTCCCCTCCCCTCGGACAGCTGGTGGAGCCATACCTTCTGAATGACCTTGGTTCTCTGGGGCAGGAATATAGTGATACAAATGACTACTTTAATGTTGCCAACCATGAGGATCAACAAGAAGAACTAGAATATGAGGAGGTGGAGCTGTATAAGTCGAGTCAGCAGGATAAACTGGGACTAACAGTCTGTTACCGGACAGACGATGAGGAAGACCAAGGCATCTACGTTGGGGAAGTGAATCCAAACAGCATAGCAGCAAAAGATGGAAGAATCAGGAAAGGGGACAGGATTTTACAGATAAATGGGATGGAAGTGCAGAACCGAGAGGAGGCAGTGGCCATCCTTACCCGTGAGGACAGCACTAACTTCTCATTACTGCTTGCCAGACCAGAGatagagACGGACACTCATTTGGATCCAGAGGAGATTGATTGTGAGTTACCTGTAGGGATGAGTGTGGACAGCCTTAATACTTCCCATCTGCCTGGTCTGTACCATTTTCGCCAACAGAGACCCCAAGCAGGCATTCCGGAGGAAACCCTACATCAGGAGACACCCATGCTCAGCTTAGCAACCCTCAGCAACAGTCAAGAGCTTGACAGTGGTGTGGGCCGAACAGATGAGAGCACGAAGAACGAAGAATCCTCTGAACATGACATCCTTCTGGGTGATGAGCAAACCAGTGCCTCCAACACAAATGCCACTAACACACCTGGCAGCTTGCGAAAGTTCAGGCCCGGCAGGagtggtggaggaggagggaACGACACGCCATCGCCGCTGTTCCCTCTCAGAGAGCTCCACCTTAGCACAGACTCACTGGACTGTGGAAGCATGGGTGGTGGGTACCTTCACGACCCCATCAGTGGGATGATAATGCCGGGCTTGACAGAAGAGGAATGCGAGAGATACAGACAGCTTCTGGAAATCAAGTGTCGCTATGAGAAGAGAATGAAGAAAGGGCAGCAAGTTCAAGAAGAGGAGCAGAAAGAAGAAGACATCCAAGAGGAAGCTGACAATACGGAGGAGACTCTGGATGAGAACAGTAACGAGAACCTGACTCCACATGAGATGGCACTTTTGGAAGAAGAAATGAGGCACCTTGAGTTCAAGTGCCGGAACATTCTACGGGCACAGAAGATGCAACAGTTAAGAGAACGCTGTTTAAAAGCCTGGCTGATGGAGGAAGAAACATCTGGACGAGCGTCTGCAGAACCTCAGGGATCTCCACTGCATGAACTGTCTGACATCAACGAACTTCCAGAGAAGGAACGTTCGGACAAGGACAGCACCAGTGCTTACAACACTGGGGGAGAGAGCTGCAGGAGCACGCCTATGGTGAGTGAGCATCGACTTCCAGTTTCTCAAGTTGATGAGTCCACAAGCCCTCTGCCAAGTAGACACAGGGACCGACCAACCTGGAGTGAAAGAGGACGAGCAAGCCTCAACAGTTCATATTCACCAAGCAGCTACAAGAAGTTTCAGACTAACACCCCTATGAACCAGAAATTCTGCTCACTCACAAGAGAAGGAACGGTCCGTCGCATGCCTGAAGGGGTGACACAGGGTGTAAATTCTAGGGTGAGTGCCCATAACAGAAATGGTGGTCGTAGTGCAGAGTCAAGTCCTTACTTCACTCGACGTCGTCATTCCAACTGCTTCACTCCGGAACGCTACCAGAGTTGCATGCATCTGGGATCCTCACTTTCTGAGAGTTCTGGACCCTTGGATAGAGCTGTGGAAGGAGAAAGTGAGGCACCAGTGGGAGGCAGTGACCGTGAAGGTCATGGGAATAGCACCTTCGGGTCATTGCCTCACCCCAGCCCAGTAAAGCTTTCTCTGGCCTTACCTTTGCCTCTCCCCCCTACGTCACCACGCATGGAATGGAAGGTGAAGATAAGAAGTGATGGGACTCGCTATGTGGCCAAACGTCCCGTCCGAGACCGGCTCTTGAAAGCCCGAGCTATGAAGATCCGTGAGGAGCGTAGCGGAATGACAACTGATGACGACGCAGTGAGCGAAATGAAAATGGGGCGCTACTGGAGCAAAGAAGAACGTAAGCAACATCTGCTGAGAGCCCGCGAGCAGCGCAGACGCAGAGAGTTTATGATGCAAAGTCGGTTGGATTATATGCGAGAACACGGTTTGGATATGGGTAAGGAGAGTCAGTCGGAGTCTGGTCAGAACTCAGCCTCAATCCTGGAGCTCAGTCAGAAAAAAAGCTCCAAGAAACGCAACCGACGCATACTGGACAACTGGATCACCATCCAAGAGCTACTCGCACATGGCTCTCGCTCTCCAGACGGGACGAAGGTGTATAATCCTCTTTTGTCTGTTACCACAGTCTGAAAGGATGGTGAGGAAGGACAACAGgaaaataatctattttatCGAATTTTCAAATACTCAACAGTTTGAAGTGTCATCTGTCTACACTACTAATATGGCTGAGCAACGTCTAGCAGCTACCACTCTTATTAATTTCAACAAATCATTTTGTAATGAGTACTGGAagttataatacataaaaagtcCCTGAAACCAGATGAATTTATTTGAGAAGCAACACTAGATAAAACTTGTTTTCATAGATACGTTTTTGATGATACTCATGcccatataaaatatacattattttaagtcTTAGTGCTGTTTTTCAAGTAAATGTACCTTGCAAAAAGGTTTTggtttttcagaaaacaaagtCAAGTAACTGATCATGGGTGGCGGTAAGTTTGTGGAAAAACCTGAGTTTCCTGATTAATGAATGTCACATTGTATTGCTTCTCAGTTTACATTATCACTCCTCTGAGGTCACGCATCTGCTTTCGAGgattttttgtttgaatttaatCAGAAAATAGCACATGGCCAAGTGACAAAGACAAAGACACTCGAGAGATTATGAATGTTGACTGAACGTACACAGACAAGCACAACGCAAACAGCACATACAGACAGGTCTTAATCAAAATCTGCTCATTGGAAGCAAACATATTGGACAAATCTAATTCATTCGACAACTTCCTCACAGCTGCACAAAAGACAAAGAATGATTCAGTTTCTTAATTCTTGAAATTTCATTGAACATAATGGGGGGATTGTACAAAGACTTTTGTACAATTTACTGCTCTAATTACAACATCATATAAATACTTAACCTGTGCAGACACAATCATGTTAAACTTTCCTACAGAGATGTGGTGCTGAACATTTGTACTGCTTGTTTCACTATTTTACTGTACTGTTCACTATGACCCAAATACGACAAAAGCACACTGTAAGCCACAgtgtgctttttcatttttgaatgtatGGTAATTATTTTTCCTAACACCCTAAGTCATCACAAAGCGACTTTCATAAGCTTGTGTGGCCAAGTGCCGAGACATACTAAACACCAGCAAAAGGGGAAGCACAAAATATACTGGAACCCTATGAAAATTAACCAGCTTCAAAACGAAAACGGATTGTACATTTTGATATACTATTATTAGGAGCATTTAATCTGAAGTGGTGCGCAAAGTGAAGCAAAGGAGTTAAAATGAGGGGATATTATTATTCACGAATAAATTAATGATATACAAATTTGTTAACATATTTGtaagtgttacattttttttgtaaaaatggcCTTAAGAGTTTTGACCAGTTTGGTGATGAGAGCCACTTGTTCAGCTCATCTAATTTTGCATGATTTTGACTATAATGTACATGCCAGAAATATACTTTAGTGGAGAACTTCAATTTCTcagtatacaaatgtatttgacCAGAGGACTTTATCCAGCATCATTTCCCATTTCTGTCTTGGTGTTAGATAAACATGTAGAAATCTACAGTTATACTCATATGGTACCTGTTGACTGATATCAATAGTTCTAATTATACAGTGTGTGACGTGCATTAGTTCTTGAGTGGTTATTTCAATGCATTGCTGAGACcgtataaaatataacattttagacaaataaaacaattttgtatgcttaataata

Function

GO: NA

KEGG:

id description
K15682 PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93134 lncRNA upstream 17309 11156018 ~ 11248294 (+) False G62904
TU93131 lncRNA upstream 17309 11243637 ~ 11248294 (+) True G62904
XR_006251601.1 lncRNA upstream 61056 11203829 ~ 11204547 (+) True LOC122350460
TU93120 lncRNA upstream 122507 10971712 ~ 11143096 (+) True G62896
TU93265 lncRNA downstream 67102 11351311 ~ 11392665 (+) True G62996
TU93268 lncRNA downstream 67102 11351311 ~ 11394149 (+) False G62996
TU93322 lncRNA downstream 158229 11442438 ~ 11445008 (+) True plp2a
TU93325 lncRNA downstream 162824 11447033 ~ 11447271 (+) True G63024
TU93355 lncRNA downstream 234201 11518410 ~ 11522911 (+) True G63052
XM_043247997.1 mRNA upstream 30119 11232914 ~ 11235484 (+) True rassf11
XM_043247998.1 mRNA upstream 30119 11233016 ~ 11235484 (+) False rassf11
XM_043246938.1 mRNA upstream 42672 11219320 ~ 11222931 (+) True LOC122350459
XM_043246931.1 mRNA upstream 46960 11212458 ~ 11218643 (+) True LOC122350456
XM_043246935.1 mRNA upstream 53291 11209229 ~ 11212312 (+) False tnfrsf14
XM_043247375.1 mRNA downstream 113169 11397378 ~ 11429768 (+) True cacna1fb
XM_043246545.1 mRNA downstream 149112 11433321 ~ 11441823 (+) True sypa
XM_043246583.1 mRNA downstream 157760 11441969 ~ 11444777 (+) False plp2a
XM_043246580.1 mRNA downstream 169372 11453581 ~ 11467956 (+) False samd10a
XM_043246579.1 mRNA downstream 169377 11453586 ~ 11467956 (+) True samd10a
XR_006251600.1 other upstream 67800 11192724 ~ 11197803 (+) False LOC122350428
TU92799 other upstream 786804 10468874 ~ 10478799 (+) True G62692
TU92796 other upstream 825107 10431802 ~ 10440496 (+) False G62692
TU92869 other upstream 912490 10348959 ~ 10353113 (+) False col2a1a
TU92500 other upstream 1559964 9704481 ~ 9705639 (+) True G62483
TU93183 other downstream 10596 11294805 ~ 11311433 (+) True G62940
TU93395 other downstream 278072 11562281 ~ 11564408 (+) False ppdpfa
unassigned_transcript_1294 other downstream 504144 11788353 ~ 11788424 (+) True trnah-gug_22
unassigned_transcript_1296 other downstream 513379 11797588 ~ 11797660 (+) True trnar-acg_41
XR_006251577.1 other downstream 532848 11817057 ~ 11820483 (+) False fance

Expression Profile