sypl2b (LOC107550468,LOC107668009,LOC107711993)


Basic Information

Item Value
gene id sypl2b
gene name LOC107550468,LOC107668009,LOC107711993
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12215778 ~ 12218469 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246559.1
AGTGAGTCCGGGTGGCGGTAGCGCGTCACGAATCACGTGGTCAAAACCATGCCTAAAGCAGAAAcaagaaaaaggaaaggaacTTTGACAACTTTCTGCTGTTTGTCTGTTGTCTAGAAAGAGaaaaCGATGAACGGATTTCGGTTAGATCTCAGCCCTCTGAAAGAGCCCCTGGGGTTTATACGTGTCCTGGAATGGATCTTTgctatttttgcttttgcaaCAAGGGGATATTCTGGCTCTAGCAGCTTCAACATCAAGTGCAAGTACAGTGCCAGCGCAGAAATAAATGTATCCTTCAGCTATCCGTTCAGGCTCAATAACCAGAAATACAGCGTCCCAGACTGCGACGTCAACGGTACAGTGACCAAAATCAAGCAACTGACCGGAGACTATTCATCTTCCGCCGAGTTCTTTGTAGCTGTTGGGGTCCTGGCTTTCCTGTACAGCACAGCTACTCTTGTGTTGTATCTGGGTTACCAGCACATCTACCGTGAATCTCCTCGTGGCCCCAACGTTGATCTACTCTTAACTGGGATCTTCACTTTTCTCTGGCTGGTGTGTTCATCTGCATGGGCAAAAGGCCTCGATGATGTGAAATTTTCAACGAGTCCAAACACACTTGTGGCCCTAAATGACATGTGTAAGAACAGCGACAACAATTGCACTGCTGGGCACGTCCCCTTAATGGGCCGCCTCAATTCCTCTGTGATCTTCGGATTCCTCAACCTTATCCTGTGGGGAGGAAATTGCTGGTTTCTTTACAAGGAGACGCCGCTGCACAAGTCAGCCAATCAGCAAGCAGGAGCAGGACAGTCATAATTAAACAGCAGGTCACATCCACATTCATCAAGCAGGTGTTGTTTCGGGATTAAAGCGGTGCTACATAGCACCTGGTCAACTAATGTTACGAATGTACCTGACTTGACCTATGTTACAAATCCACCAAAAGTCGTCCATAGATTATCTCTGCTATGTTAATTTATGGTCCAATTTAGATGTGCATTTTACACACTACAGCAAAGCTGTATACTAGAAAAGGTACAAGAGTACATTAGTacataaagtgtttttataaagttgcataattaaaaatgtacatttaatctCTTTACGGTTGTTTGAACTTGTTACATGAACAAAATGTACTGAATGTTTTTGACTCTTGTTCACTGAagtattatttttgctgttctGATTAGTAGGTTTTGGCTTTATAAAATATCACCTCAGAGCTAACTTTTCCACTCTGCTTCTTGTGGTTGAAATGGCTTCATATGAACTGTGTGCCTTATAACTTAGTTGGTTTATATCGaagaaatgtttacattatatcAGGCACGacttgatgaaaaaaaaatgctgtctttGTTTACCAATATTAGAGGTCTTAAATAAATcatcctgttttgttttattgtg

Function

NR:

description
synaptophysin-like protein 1 isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246559.1 True 1422 mRNA 0.42 7 12215778 12218469

Neighbor

gene id symbol gene type direction distance location
ngrn LOC107550488,LOC107668094,LOC107711999,LOC107736076,LOC107731126 coding upstream 15985 12197268 ~ 12199793 (+)
slc6a17 slc6a17,LOC107668054,LOC107731213,LOC107678997,LOC107712000 coding upstream 81049 12115904 ~ 12134729 (+)
slc16a4 slc16a4,LOC107731239,LOC107678963,LOC107712002,LOC107668003 coding upstream 141472 12061627 ~ 12074306 (+)
LOC122350149 si:ch211-269m15.3,LOC107731249,LOC107550453,LOC107712004,LOC107591828,LOC107678953 coding upstream 170208 12031564 ~ 12045570 (+)
mmp9 mmp9,LOC107668111,LOC107550477,LOC107678941,LOC107591829 coding upstream 184554 12026342 ~ 12031224 (+)
atxn7l2b LOC107668112,LOC107550490,LOC107731254,LOC107711991,LOC107591815 coding downstream 2423 12220892 ~ 12228499 (+)
gpr61 gpr61,LOC107711990,LOC107680283,LOC107591819,LOC107550469,LOC107731157,LOC107668011 coding downstream 33762 12252231 ~ 12260214 (+)
gnai3 gnai3,LOC107731160,LOC107679171,LOC107668041,LOC107550494,LOC107591822,LOC107711987,LOC108442115,LOC108265813 coding downstream 45195 12263664 ~ 12275773 (+)
ampd2b ampd2,LOC107668035,LOC107550495,LOC107679126 coding downstream 68208 12286677 ~ 12305712 (+)
gstm.1 LOC107550498,LOC107591812,LOC107679185,LOC107679206 coding downstream 87734 12306203 ~ 12308908 (+)
G63204 NA non-coding upstream 26299 12180187 ~ 12189479 (+)
G63207 NA non-coding upstream 76368 12131897 ~ 12139410 (+)
G63195 NA non-coding upstream 160531 12055042 ~ 12055247 (+)
LOC122350249 NA non-coding upstream 161426 12052582 ~ 12054352 (+)
G63188 NA non-coding upstream 198426 12016726 ~ 12017352 (+)
G63218 NA non-coding downstream 22172 12240641 ~ 12327938 (+)
LOC122350247 NA non-coding downstream 329275 12547744 ~ 12570426 (+)
G63534 NA non-coding downstream 421607 12640076 ~ 12640617 (+)
G63538 NA non-coding downstream 512586 12731055 ~ 12732041 (+)
G63552 LOC107556489,LOC107717529,LOC107591772,LOC107711952 non-coding downstream 596496 12814965 ~ 12892529 (+)
lamtor5 lamtor5,xip,LOC107668015,LOC106566397 other upstream 155581 12057657 ~ 12060197 (+)
LOC122350223 NA other upstream 164810 12047509 ~ 12050968 (+)
si:ch211-163l21.10 LOC107731153,LOC107549947,LOC107668018,LOC107745734 other upstream 358357 11853594 ~ 11857421 (+)
fance LOC107731142,LOC107668098,LOC107549969,LOC107678824,LOC107745739,LOC107591838,LOC107577385 other upstream 395119 11817057 ~ 11820659 (+)
ppdpfa ppdpfa,LOC107678627,LOC107549986,LOC107745755,LOC107668053,LOC107731217,LOC108412507,LOC103034602 other upstream 651370 11562281 ~ 11564408 (+)
G63453 NA other downstream 271791 12490260 ~ 12491924 (+)
G63533 NA other downstream 419761 12638230 ~ 12638565 (+)
LOC122350405 LOC107556500,LOC107717521,LOC107669623,LOC107679608,LOC107591846 other downstream 525709 12744178 ~ 12747558 (+)
zgc:136971 zgc:136971,LOC107717528,LOC107669673,LOC107556470 other downstream 603565 12822034 ~ 12833000 (+)
G63676 NA other downstream 788953 13007422 ~ 13008830 (+)

Expression


Co-expression Network