CI01000005_00596581_00598577


Basic Information

Item Value
gene id CI01000005_00596581_00598577
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 596167 ~ 598577 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_00596581_00598577.mRNA
ATGTTATTAGGGGAAATACGTATATACGTGGCTTTGGCACCGTCGGTATTCCAAAAGATGATGGAGTGCATACTCAAAGGTGTACCAAATGTGCAGAACTACCTCGATGACGTCATTTGCTTTAGACGCACGGAAGCGGAACACGACGTTGCGCTGAACACAGTACTGAACCAACTAAAGGAGGCTGGTTTACAGTTGAATGAACAAAAGTGTCAATTTAGGCAGAAGAGCTTGCGCTTTCTGGGACACTTGGTTACAGCACAGGGCATTCAGCCAGATACTGAGCATTTACAGGCAATTGTACAAGCGCCAGCTCCTAAAGATGCACCAACCCTACGCTCGTTCCTGGGTATGCTGTCATGGTATAATAAAAGTATTCCCAATTATGCTACCATAGTTGAACCATTACGTGCATGCCTCCGCCAAGAGGGACCATTTCAGTGGAATGAGGAAGTGGAGAGCTGCTTTGTCACTGTGAAGCAATTGCTAGTTTCAAGCCCAGCATTAGCTCTGTACGACCCTGATTTACCATCCATAATCTCTACAGATGTGTCAGATTATGGTCTTGGTGCAGTGTTCACCCAAATCCACCCAGACAACACAGAGCGTACAGTCGCTTTTGCCTCCAGATCCTTAACTCAGACTGAGAGGAAATATGCAACAGTGGAGAAAGAGGCTTTGGCATGCGTGTGGGCGGTGGAAAAGTGGAGGACCTATCTGTGGGGGCGCAAGTTTACACTGCAAACAGACCATCAGGCTCTCATGACACTACTCTGTACAAAAGGAGCAGACAGGGCTGGAATGCGCATAGCTAGATGGGCTGCGCAACTGCTATGCTATAATTATGACGTGGTCTATCGTGCAGGTTCGTTGAACTGTACAGCTGATTGTCTTTCAAGGTTGCCCTTGCCATCTACCACAGACATGGACTCGGACACAGAACCTGAGCTAGTTGCGTTGCTGTCAATGTGTCTTACGTCAGTTACCAGAAAGGAGTTTGAGTCTGCTTCTATGGCCTGTTCTGAGCTTTCTTCCCTGTGTGCTCAGATTGAAAAGGGTTGGCCAGCTTCAGCAAAAGCCCTGGATTCCCCACTGCATCCGTACTTCAAAATGAGACATGAGCTTTGTGCGACGAACAATCTAGTGTTCCGGGGTTCACGGTTGGTGTTGGTGGTGCCAGTGACATTGCACAGAACCATGGTCACTTTAGCACATGAGAATCACCAGGGCATAGTAAGGACCAAACAGCGGTTGCGTGAGCTGTATTGGTTTCCAGGAATGGACGCTATGGTTCAAACTCAGATTGCAGCACATTCGTTCTGCCAAGAGTCAGACAGGACGGCAAAGACTACTGCTTCTCCATTACAGCCGCCTGTGGAAATAGAGAAACAAGTGGGCCCGAGCACGTACAGATTGGCAGATGGACTGTGGCATTCTTCTCACTTGTCCTTGGTTCCAGAGGTTCTAAAGCCGACCTCAGATCTGTCTGCTGCTGATGTGTCAGTTACAAATGTTCCGAACACTGAACAGAGAACAGAAAGACGTTCTGTTCGACAGCATAAACCACCTTTTTGGATGAAAGATTATGAGAGTAAATAAGGGTATACGGTGGTTTGAATTACTGACTATATGTATGTATAGCACAGATTTAGATTGAATATAGTCATGTTAAGATGCTGTTATTCTGTTGAATTTATGAAGAAGTGAAATATTCCAGAGAGTTAGAATTTAATGGATGTAACTGCAGTTGCTTAACTACTGTAAAGGAATGTAGTCGTAATAAGGTGGAAACTTATTGGTTCATATTGAAATTAATAACTGTTTTGAGTTAATCGGTACTAAGTGAAATAGCTTTACGTAATAGGGGAGATGTTGTGTCCTGTTATTCAGTGCAATACTTACTGAGACCACTAGGGGGAAACAATGTTATTAGGGGAAATACGAATAGAAAAGAGGTGAGGAAAAGAATAATGATGAGCATGAGTTGCATGTGTGTTAAGAGTTAGTAATAAA

Function

NR:

description
Transposon Ty3-G Gag-Pol polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_00596581_00598577.mRNA True 2013 mRNA 0.45 2 596167 598577

Neighbor

gene id symbol gene type direction distance location
CI01000005_00461483_00481276 NA coding downstream 114383 460760 ~ 481784 (-)
CI01000005_00358864_00426242 NA coding downstream 169170 358848 ~ 426997 (-)
CI01000005_00278622_00282152 NA coding downstream 313698 278439 ~ 282469 (-)
CI01000005_00134161_00235512 AGPAT5 coding downstream 360655 134161 ~ 235512 (-)
CI01000005_00006610_00010194 NA coding downstream 585973 6610 ~ 10194 (-)
CI01000005_00700274_00704932 NA coding upstream 100897 699474 ~ 704932 (-)
CI01000005_01250101_01298320 MYOM2 coding upstream 650261 1248838 ~ 1298320 (-)
CI01000005_01648294_01654249 OIT3 coding upstream 1049414 1647991 ~ 1654249 (-)
CI01000005_01674196_01674495 NA coding upstream 1074862 1673439 ~ 1674495 (-)
CI01000005_01677318_01687512 MCU coding upstream 1078584 1677161 ~ 1687599 (-)
G35829 NA non-coding downstream 23756 556249 ~ 572411 (-)
G35735 NA non-coding downstream 339680 256277 ~ 256487 (-)
G35733 NA non-coding downstream 340938 254999 ~ 255229 (-)
G35699 NA non-coding downstream 346607 223127 ~ 249560 (-)
G36012 NA non-coding upstream 330099 928676 ~ 929490 (-)
G36021 NA non-coding upstream 345591 944168 ~ 946077 (-)
G36023 NA non-coding upstream 353600 952177 ~ 968609 (-)
G36033 NA non-coding upstream 374508 973085 ~ 994565 (-)
G36072 NA non-coding upstream 468296 1066873 ~ 1067248 (-)
G36049 NA other upstream 422718 1021295 ~ 1043672 (-)
G36628 NA other upstream 1064690 1663267 ~ 1664279 (-)
CI01000005_01883894_01899867 NA other upstream 1284677 1883222 ~ 1899867 (-)
G38510 NA other upstream 3606268 4204845 ~ 4206208 (-)
G38415 NA other upstream 3782661 4381238 ~ 4401110 (-)

Expression


Co-expression Network