CI01000005_00871210_00996843 (CSMD1)


Basic Information

Item Value
gene id CI01000005_00871210_00996843
gene name CSMD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 871210 ~ 998853 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_00871210_00996843.mRNA
ATGACTCATAAAGCTTGTAAATCAAAGTCAACAGAGAGTCTCATACGAACATGTTCATCAAATTACACTATTGTGTCAGCAGTACACCTTTTTCATAACATATATTTAGGATTGTATCAAATTCTACCAAGTCACACATGTGGAAATCCAGGGTTGATACCCAGAGGGATTATCCACGGGACCAGATACAACGTCGGCGACAAGATCCGCTACAGTTGTGTGATGGGATATGTTTTGGAGGGTCATGCAGTGCTCACGTGTATAGTGAGCCCAGGAAGTGGGGCATCATGGGATTTCCCAGCTCCATTTTGTAGAGCTGAAGGATCATGTGGGGGAACGTTAAGAGGAACAACAGGGACAATATCAAGTCCACACTTTCCTTCAGAGTATGAGAACAATGCTGATTGCACGTGGAGTATTCTGGCAGAGCCAGGAGACACCATTGCCCTAGTCTTCACAGACTTCCAACTAGAAGATAGATATGACTTTCTAGAGATCAGTGGCACAGAAGCACCGTCAATATGGTGTGAAGACAATGCAGCAAGTTATTCTAACCTCACAGGCACAGCTATGACATTTAACAAACAGGTCCGCTATAGTTTCATATGGATTACTGAAACACTGGCTCGGCTGACTGGAATGAATTTGCCATCCCCTGTCATCAGTAGCAAGAATTGGCTGCGGCTTCACTTTACATCTGACAGCAACCATCGGAGGAAAGGATTTAGTGCCCAATATCAAGTGAAGAAGGCCATCGAGCTGAAATCCAGAGGGGTGAAAATGCTTCCGAGCAAGGATACAAGTCACAAAAACGCAGTCTTAAGCCAAGGGGGGATGGCTGCGGACATTTGTCCAGATCCGGGGATTCCTGAGAATGGGAAAAGAATTGGCTCCAGCTTCCAGGTTGGCGCCAGCATCCAGTTTTCCTGTGACGACAGCTACGTACTGCAGGGATCAAAGAGCATCACTTGCCAGAGAGTGACTGAAACCCTGGCGGCCTGGAGTGACCACAGGCCTATCTGTCGGAGGCACAACTCACAAGCTCACAAATGTGTTTACTTGCTGAGTGTCTCGATCACACGACCACTAAACAGCGTGTTCGAGTTCGTCGTAACATTAAAAGTCTCAGCTAGGACCTGTGGCTCTAATCTGCGGGGCCCCAAAGGCATCATAACATCTCCAAATTATCCTGTCCAGTACGAGAATAACGCACACTGCGTGTGGGTCATAACAGCGGTGGATCCAGAGAAGGTCATCAAGCTAGCTTTTGAAGAGTTTGACCTTGAGCGAGCGTACGATACGTTAACAGTGGGTGACGGAGGGAAGATAGGTGATGCTCGAAGAGTGCTTTATGTTCTCACGGGATCCAGCGTGCCTGATTTGATTGTGAGTATGAGCAACCAGATGTGGCTCCATTTGCAGTCCGATGACACGATCGGATCGCAAGGTTTTAAGGCCGTATATGAAGCATGCCAGTTTCTAAATGGTATGCAAATCAAAGGCAAATGGAACAGCGTATGTGCTGCTCCGACATGTTTAAAAAGCTTGCGTGAAATATTCTACCTGCCGTTTACCCTGCAGGAGAATAGCATCAAAGCAAATTTGACATTTTTGTCAATAGGACACATAATAGATTTGTTTGGTCTAGAGCTTAAGGCAGAAATTGAGAAAGGTGGCTGTGGAGACCCAGGCATCCCTGCATATGGAAAGCGAACTGGAGACCATTTTTTACATGGTGATGTGCTGACCTTTGAGTGTCAGGCTGCTTTTGAATTGGTTGGCGAGAGGACAATATCATGCCAGCAAAATAACCAGTGGTCTGGAAACAAACCCAGCTGCGTCTTCTCCTGCTTCTTCAATTTCACCACTCCGTCAGGCATCATCCTTTCGCCAAACTACCCAGAGGAATACGGAAACAACATGAACTGTGTGTGGCTCATTATAGCCGAGCCGGGCAATCGGATCCATCTCATTTTCAGCGATTTTGAGATGGAGCCCCAGTTTGACTATCTCATTGTGAAAGACGATGGGATGCCGGAGCCCACCACATTTGGAACGTTCTCTGGGAAGGATGTACCCTCACAGATCGCTAGTAATGGGCATATAATGCGCTTGGAGTTCCAGTCAGACCACTCGAATACGGGAAAGGGGTTTAATATCACCTACACAACGTTTGGTCAAAATGAATGTCACGACCCTGGTATTCCCATCAACGGGCAGCGCTTTGGAGAGCACTTCTTACTGGGCAGCTCAGTGCTCTTCACATGCGATGAGGGCTTCATCAAGACCCACGGATCCGAATCCATCACCTGTGTCATCCAGGATGGAAACGTGGTGTGGAACGCAGCAGTCCCCCGCTGCGAAGCTCCATGTGGCGGACATCTAACGGCTCCCATGGGAGTCCTACTGTCCCCTGGCTGGCCCGGATACTACAAAGACTCCCTTAACTGTGAATGGGTGATTGAAGCCAGAAAGGATCATGCCATCAAGATATCTTTTGACAGGTTTCAGACGGAGGTTAATTACGACACGCTGGAAATTCGGGATGGGCCCTCCAATTCGTCGCCTCTGATTGGCGAGTACCACGGCACTCAAGCCCCTCACTTCCTCATCAGCACCAGCAATTACATGTACCTGCTCTTTACCACCGACAACAGCCGCTCCAGCGAAGGCTTCCAGATCCGCTATGAGAGCATTATGATGGAAACAGATTCCTGTTTAGATCCAGGGATCCCGGTGAATGGAAAAAGGCACGGGAACAATTTCGCCATCGGCTCCAGAGTGACGTTTAGCTGCGATCAAGGCTATACTCTGAGCGATGAGGAGCCCATTGTGTGTGAGAGGAACCATCAGTGGAACCACGCGCTGCCTAGCTGTGACGGGATTGAAGTAAACAAAGTGTTTTCTGCTTTGTGTGGGGGCTATATCTATGGAAAAACCGGAACAGTTCTCTCCCCTGGTTTTCCAGATTTCTACCCAAACTCACTGAACTGCACTTGGACTGTAGAAGTGTCTCACGGGAAAGGAGTGCAGCTTCTCTTCCACACGTTCCACCTGGAGGACTCCCATGATTACCTGCTCATTACCGAGGACGGCAGCTTCACTGAGCCGGTGGCCAGGCTCACAGGCTCCGTCCTGCCGCCCTCCATCAAAGCCGGCCTGTTTGGCAACTTTAGTGTCCAGCTACGCTTCGTCTCAGACTTCTCCATGTCATACGAGGGCTTCAATATCACCTTCTCTGAGTACAGCCTGGAGCCATGCGAGGACCCAGGAGTACCTGCATACAGCAGGAGGGTGGGCTTCCAGTTCGGGGTTGGCGACTCGTTGGTCTTTTCCTGTTTTGCCGGCTACCGTCTGGAAGGCGAGAGTAAGATCACTTGCTTGGGTGGAGGGCGGAGAGTATGGAGTGCAGCCCTGCCCAGGTGTGTGGTCCTCCTGTTGGACCGGGTTTTAATAGTGGTTAATCGCTGTGGAGTAATAAGAGCTTGTGAGTGTGTCTTTAATTGGTCTGCCGAGTGTGGAGCCACTTCTGTGGGCAGTCAGGGTGTACTACTGTCCCCCAATTACCCATTAAATTACGACAACAACCACGAGTGCATCTACCGCATTGAGACTGACAGAGGCAAGGGGATTCAAATCATAGCCACCACTTTCCAGCTTCAGGAGGGAGATTTCCTCAAGGTTTATGATGGTGAGGATAGTTCATCAAGACTCCTGGGCAATTTCACAAAAAACGACATGTCTCATGCCATCCTCAACAGCACGTCCAACCATCTCTGGATGGAGTTTAACAGCAATGGTACCGGTACCAGCAAAGGATTCAAGCTATCATATAGTAGTTTTGACCTTGTCAAATGTGAGGAGCCAGGGACACCTAATTACGGCTACAAAATCCAAGACGACGGCCATTTTGCAGACACATATGTGTTGTACAGTTGCAATCCTGGATACACGCTGCACGGAAGCAGCACACTGACGTGCCTCAGTGGTGACCGTAGGGTGTGGGACAAACCACTTCCATCTTGTATTGCCGAGTGCGGAGGACACATTAGCGGTGCCACATCTGGAAGGATTCTGTCACCTGGTTACCCAGCCCCTTACGACAACAACCTTCACTGCACCTGGTCCATCGAGGCGGACACAGGCAAAACCATCAGCCTCCACTTCATAGTCTTTGACACGGAGGTGGACCATGACATTCTGAAGGTTTGGGACGGACAAGCGGAGAGTGGCATTCTGCTGAAAGAGTGGAGTGGGTCGCTTTTACCCGAGGACACTCACAGCACTTTCAACATCCTCACGCTTCAGTTTGACAGCGATTACTTCATTAGCAAGTCCGGTTTCTCCATCCAGTTCTCTAGTATGTATCAGATTCTCCTTGGCTGTGTTCAGAATACTACAGTTGCCACGACCTGCAACGACCCAGGGACCCCTCAAAATGGAACACGCTATGGAGACAGCAGGGAGCCCGGCGACACCATTTCCTTTCAGTGTGACCCTGGGTACCAGATTCAAGGAGTGTCTGAAATCACTTGTGTTCAGCTCAACAGCCGTTTTTTCTGGCAGCCGGACCCACCCACCTGCATCGCTACCTGCGGGGGCAATGTGACAGGGCCTGCTGGGGTAATTCTATCACCCAACTATCCTCAACCCTACCCACCAGGAAAAGAGTGTGACTGGCGGATAAAAGTCAACCCTGACTTTGTCGTCGCTTTAATCTTCAAAAGTTTTAACATGGAGCCCAGCTATGACTTCCTCCATATCTATGAGGGCGAAGATTCCAACGGACCCTTGATCATCAGTCTGCAGGGGAACCAGGTTCCCGAGCGCATCGAGAGCAGTGGGAACAGCCTTTTCCTGGCCTTTCGCAGTGATGCCTCCCTGGGGATGTCTGGCTTTGCCATTGAATATAAAGGCAAGTCTCACCCTGCAGGTGTATGGTTTGTTCCCTTGAGAGGAGGGCTTGGGAAACAAGTGAAGCACAACCACGGGGTCAGTGGTCACTTTCAGATTGCATTTAAGGTTGAGTGTCATGAAAACATGTCCAGGTGCACTCGCTGTTCCTCTGTTGTTGTGGAAACGAGGAAGATTGTGTTGCACACTTGCAATTTTGCAGATAGAATCTTCCCTACCTCCTTCCCACTTTCTCAGCCCTGGGAATGGCTGGCAGAAAAGCCACGAGAAGCATGCTTCGACCCTGGGAACATTATGAACGGAACTAGATTGGGAATGGACTACAAGCTGGGCTCAACTGTGACGTATCAGTGTGATTCTGGGTACACCATTGCAGGACCGCCTACTCTCACCTGCATCATTGGGACTGATGGGAAACCTGTATGGGACAAAGCTCTGCCTACGTGTAAAGCGTGTTCAAAAACAACACCAGGTTATAGATATGAACGTGCAATGAACATCATTGACCCCAATCCAAAGGTCAAGCAAGGGTTTCGCACCTCAGTAGCATCCGTTGATTATTTAACCTCTTTTGATGGAGATGGAAAGCCGCTGATGCCCTTTGTGAGACAGCCTCATTTCCGCACTCCAGGAACATTTTGTTTGTCCTCACTGATGGAATTTCCAGCACGTTGCTTCGCCCATCTTTATGCATGAGCTGTAACTGTGGGGTAGAGACATATTCCTATACAGGTCATTGTTGAGCTAACATAATCATCTGATTGTGTCATGAGAGATGCTTTATTTGATCTTAATCATCCGCACAGAGTGTACGCAAGCCCACGTTCGTACAATCCATTAGCTTTGTGCCTGCTAAGAATCCCCCCCGGCTCCTCTATTAGTTAAGTGAGTATGTCTACCAAAGACAACTGGATTCTGGAGAGGTTGCACAGCCTGACTCAGTCTATATTAGCCTCTTTAAATAACGGTAGCAGGGATAAACATGTTTTTTTTTTTTTTTCTGTTTTAAATAATGAAGTGTTGCAGTCAGTTGCAGTTCAACGATGACATTTTGTTGTTTCGGTTAGGCAATCATGTTCAAACACCAGCATGTACACCAGTTGTACAAACTGGTAAAACCCCAGAAACTGCCTAACAACTACTCGGAACACCTTCGTAACATGACAAGGCCTATATAACTTCAGATCTCTCTTCAAACTGTCAAAGTATTCAAAGGCTCATATAACATTCAGATTTCATACTTAAAACTTCCAGGCAAGGTTGTCATTCAACCCAACATTCAAAGTTTGTCTTGAGCTTGACCTCTAGTTGTGGTTAATGCTGATTTGGTCCTTGTCTAGTACCCTGTTTACACCTGGTATTAAGATGCGTTTTGGTCGATCGGATCACAAGTAGACTAGAGAGACACATTTCCATTTACACCTGGTATTTCAATCTGTCTCTTTTGTCCAGTCTAGACTAGCAATATGTGGGTACAATATTTTTTTCAACAATGTAATGTTTTAAACACTTTTTTTTTTTTTTAACTCTACATGTGTGCAGTAAAAGTAACTTTAAAGAAGATCTACATTTCTCATTTTCATCCATGGAGATGACACATGGAAAATGTGCTATGCTTTATGGATAATTTCTGTCACCTGGTGGAAAACAAACATACTTCATGACATGAAACATGAAAATGATATGAAATTACCACTATAACCAGGAGATGGCTGCAGAGGACCATTCATTAGCTCATTTGCTATTTCCACTCCCTTTTATAGTTCTTTTCACATGTTTTACTTTTGGCCTGCTTTTTTATTAATGAATATTATAACACATTTTAGCAATTTGATTGCACTGAAGTATGAAGTATAGTATGGGTAGGAAAAGTCACAGGGCCCTATCATACACCCGGCGCAATGCGGCACCAGGCGCGACACAAGTGTTTTTTGCTAGTTTCAACCTGACGCATTTATCATTTTCATCATTCCATCCTTCGCCACATTGTTTAAATAGCAAATGCATTTGCACCCATTTGGAACCGAGGTGTGTTTGGCCTTATTGTGGGCGCGTTGCTATTTTGAGGCAACTGAAATAGACTGGTCTAAAGTCAATGCAACAATATTTGTTTTGTTATTTAAAGAGCGCGTTAGTAATATGCGCCTATATGCGGGTGCACAACACGCGTACACTCTGCTTATTACACACACAGGGACGCACAGCAGCACACAAACATGCCAAATATTAAAAATAAAAGGATTACAGTGTAAAAGATTATTATTGTGTGCATAAAGATAAAAATGTTTTGGTGGAATCTGGCTTGTCCCGTAGATGGTCTGCTCGCGTGCTTTAACCTCACGCACGAGCAGATCCGTTTCCTCGCTAGAGAAGCATTCAGTTTTTCTGCTTGCAGATTCCGCCATGTAAAAATAGCGAATCCACCATGGCCCGAGCGCAACTGGCTTTTAAAGGGAATGGGAGATGAGACTCTGATTGGTTTATTTCACATTACGCCCAAAACACACCCATTACTCATTAAGAGAATAGGGACAACCCTTTTAGACCTGGCGCGCCGACCATTTTTCCCGTCGTTAAACTAGCAAAAGTGGATTCGGACACGCCCTAAGTGCACTTGCGGTGTGCGCTTTAGACCATATGCTTAGATCGTTAAAATAGGGCTCACAAAGTCTCATGGACATATAGATGAAAGGAGTTTCATTAAAA

Function

symbol description
csmd1 Predicted to act upstream of or within several processes, including learning or memory; mammary gland branching involved in pregnancy; and reproductive structure development. Predicted to be integral component of membrane.

GO: NA

KEGG:

id description
K17495 CSMD; CUB and sushi domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_00871210_00996843.mRNA True 7620 mRNA 0.47 37 871210 998853

Neighbor

gene id symbol gene type direction distance location
CI01000005_00694797_00695499 CSMD1 coding upstream 175617 694797 ~ 702319 (+)
CI01000005_00296675_00338233 ANGPT2 coding upstream 532977 296675 ~ 338233 (+)
CI01000005_00288278_00288811 NA coding upstream 582168 287027 ~ 289042 (+)
CI01000005_01008534_01078153 CSMD1 coding downstream 8310 1007163 ~ 1078322 (+)
CI01000005_01172014_01174829 NA coding downstream 173094 1171947 ~ 1175210 (+)
CI01000005_01305536_01308522 NA coding downstream 306683 1305536 ~ 1308662 (+)
CI01000005_01348589_01365615 RPS6KA2 coding downstream 349736 1348589 ~ 1366112 (+)
CI01000005_01373895_01396081 RPS6KA2 coding downstream 374295 1373148 ~ 1396897 (+)
G35534 NA non-coding upstream 58872 809764 ~ 812338 (+)
G35531 NA non-coding upstream 179841 685523 ~ 691369 (+)
G35527 NA non-coding upstream 379461 412157 ~ 491749 (+)
G35584 NA non-coding upstream 471669 360253 ~ 399541 (+)
G36103 NA non-coding downstream 128352 1127205 ~ 1127419 (+)
G36136 NA non-coding downstream 154283 1153136 ~ 1153365 (+)
G36163 NA non-coding downstream 179763 1178616 ~ 1178829 (+)
G36194 NA non-coding downstream 214047 1212900 ~ 1213423 (+)
G36196 NA non-coding downstream 218763 1217616 ~ 1217949 (+)
G35533 NA other upstream 347429 491908 ~ 523781 (+)
G36223 NA other downstream 504290 1503143 ~ 1537804 (+)
G36291 NA other downstream 660880 1659733 ~ 1661032 (+)
G37392 NA other downstream 2723891 3722744 ~ 3723503 (+)
CI01000005_04735429_04736817 COX20 other downstream 3736493 4735346 ~ 4737082 (+)
G39930 NA other downstream 5998691 6997544 ~ 6998340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001766 LOC106589815 coding CM030143.1 CM030143.1 15016232 ~ 15118185 (+)