CI01000005_01008534_01078153 (CSMD1)


Basic Information

Item Value
gene id CI01000005_01008534_01078153
gene name CSMD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1007163 ~ 1078322 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_01008534_01078153.mRNA
CTATATATTCCCTAGACATTCTATACATCCCTGCTTTTCACACATTGCCGGTAACATATATATGTATATATATATATATACAGTTGCAAGAAAAAGTATTTGAACCATTTGCAGAATCTGTGAAAATGTGAATAATTTTAACAAAATAAGAGAGATCATACAAAATGCATGTTATTTTTTATTTAGTACTGTCCTGAGTAAGATATTTTACATAAAAGATGTTTACATATAGTTCACAAGACAAAAAAAAAAAATGTTTTGTTTTGTGATGGTTGTTCATGAGTCCCTTGTTTGTTCTGAGCAGTTAAACTGAGCTCTGTTCTTCAGAAAAATCCTCTAGGTCCTGCAGATTCTTCAGTTTTCAAGGATTTTTTTGCATATTTGAGCCCTTTCTAGCAGTGACTGTATGATTTTGAGATCCATCTTTTCACACTGAGGACAACTGAGGGACTCAAACACAACTATTAAAAAAGGTTCAAACATTCTCTGATGCTCCAGAAGGAAACAAGATGCATTAAGAGCCGAGGGGTGAAAACTTTTGAACAGGATGAAGAGGTCTTATTTTGTTTAAATATCTTTTTTTTTTTTTTCATTTAGTACTGCCCTTCAGAAGCAACAGAAGATACTTGCAGAGATACAGATGTTTCCCGGAAGAAAAATTAAGTACAATTTACCTTTTCACCTCCCGGATCTTAATGCATCTTGTTTCCTTCTGGAGCATCAGTGAATGTTTGAACCTATTTTAATAGTTGTGTTTGAGTCCCTCAGTTGTCCTCAGTGTGATAAAATGGATCTCAAAATCATACAGTCACTGCTGGAAAGGGTTCAAATATGCAAAAAATGCTTGAAAACTGAAGAATCTGCAGGACCTGGAGGATTTTTCTGAAGAACAGAGCTCAAACAAGGGACTCATGAACAACCATCACAAAACAAAAAAACAGTTGTAGATCATCCAGGTAACCACACACAATATTAAGAATCAGTGGTTCACATACTTTTGAACAGGGTTTTTTTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTTTTAATAAATTCAGCTTTATTTATTTATTTATTTTTTGTCTTGTGAACTATATGTAAACATCTTTTATGTAAAATATCTTTGTGTGTGTGTATATATATATATATAAGGTGTATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATAAGGTGTATATATATATATATATATATATATATATATATATATATATAATATATTTCTGTAATGGTAGAGCTACATTTTCAGTGGCCATTACTCTACTCTTCAGTGTTACATGATATTTAACAAATACTTCTAATATGCTGAAATGAAAATGGTTGTCCTGCTTGGTGAAAGTCGAAAGTGTGGAAATGTTAATAGGAAGTGGTCCATCGGTTACAAGGTCATACTCAATGGGAAAGACCTGAATTACGAATCAGTTTTACTAAAATACCTGTCAGACGCTATAGCAATTCCCAAAGCCTTTCCACGCGGTTTGCATGATGTGTTAATTGTAGGCTATTCTAGCAGCGCTACCATAAAGCTGGTTTGTGCAATTAATGTCAAGCTCAAGCAAATTAACCCTGCTTGTATAAAGCACCATGCGGTGGGCAGTACACTGGATCAGAGGGGGTGGTATTATCCCCAAATTACCCTCTCAACTACACGACAGGCCAGACCTGCTCCTACTACATCACAGTATCTGGAGAGTTTGCAAGCCAACACATTTAATCACAGCTTCATCACTGGTCTCAGCAGTGGTGATGATAGTAACACGCTCAGTGTGTTTCATTATGTTTCCTCAGTGGTGTTTGGGCAATTTGCCTATTTCCAGACAGCCATGAATGACTCCGTTGAGTTATTTGATGGGCCCAATCAGAATTCTAGGCTGCTAAGCTCCCTGGCTGGGTCTCATTCCGGAGAAACCTTGCCCTTGGCCACCTCAAACCAAATCATGCTGAGATTCAGCGCAAAAAGCGGCCCATCTGCCAAAGGTTTCCATTTTGTTTACCAAGCTGTTCCACGCACCAGTGATACACAGTGCAGCTCCATCCCAGAGCCCAGATACGGCAGGCGGATTGGTTCAGAATTCTCAGCTGGCTCCATTGTTCGTTTCGAGTGCAACCCTGGATACCTTCTCCAGGGATCCAAAGCCATCAAGTGTCACGCGGTCCCTAATGCTCTGGCACAGTGGAATGACACCATCCCAAATTGTATAGTTCCATGCAGCGGGAATCTGACAGAAAGGAGAGGTACCATCCTCTCCCCCGGGTTCCCAGAGCCTTATGGGAACAGCCTGAACTGTGTGTGGAAAATCATTGTTACAGAAGGTGCCGGTATCCAGATCCAAGTCATGAGCTTTGCCACCGAGCATAACTGGGACTCGTTAGAAATCTACGATGGTGGCGATATGACAGCTCCAAAGCTTGGGAGCTTTTCAGATCTCAATGGTCCAAATTATACAAGCCCGGAGTCATTTGCGAGCATTGGTACAACGGCTCCAGCCTTGTTGAACAGCACCTCCAACCAGCTTTACCTGCACTTCCATACAGATATCAGTGTCGTCGCAGCTGGATTTCACCTTGAGTACAAAACTGTGGGACTGACTACCTGCCCGGAACCCGTGATCCCAGCCAATGGCATCAAGAATGGCGACAGGTACATGGTGAATGAGGTTGTGTCGTTCAGCTGTGAGCCGGGATACGTGCTTCAGGGACATTCTCACATAACGTGTATGCCAGGAACCGTGCGCCGCTGGAATTACCCCCCTCCACTCTGTATTGCGAAGTGCGGCGGGAATCTGTACGATATGAGCAACGTGGTCCTGAGCCCGGGTTTCCCTGGGAACTACCCTGGAAACTTGGACTGCACCTGGAGAATCGTGCTTCCCATTGGATACGGGGCACACATCCAATTTCTCAACTTCACCTCTGAGGATAACCACGATTTTTTAGAGGTTCGCAATGGGCCGCACCACAGCAGCTCTCTGATTGGACAGTTCAGCGGAAGCCAACTGCCGCCCCCTCTGCTGAGCAGCACTCACGAAACTGTCATCCACTTCTACAGCGACCACTCCGAAAACAGACAGGGCTTTAAACTCACTTACCAAGCATATGAATTACAAAACTGTCAAGACCCATATCCATTCCACAATGGATACATCATCAACAGCGATTTCAACGCAGGCCAATCCATAACATTTGAATGCTTCCCTGGATACGTGTTGGTCGGTCACCCTGTGCTAACATGCCAGCATGGAATCAACAGGAAGTGGAACCACCCCTTTCCTCGCTGTGAAGCTCCCTGTGGTTACAACGTGACGGCTCCAAACGGCACCATTTTCTCTCCAGAGTACCCAAACGAGTACCCAGACTCTCAGGACTGCACTTGGCTCATCACAGTGCCTCATGGTCATGGAGTTTACATCAACTTCACCCTGCTCCAAACTGAGCCCGTGACTGACTATATCGCCGTCTGGGACGGCCCAGAGCAAAGCTACCCGCAGCTGGGGATTTTCAGCGGCAACACAGCCCTCGAGTCAGCCTACAGCACTTTCAATCAGGTTCTTATCAAGTTCCACAGCGACTTCTCGACAAGTGGATTCTTTGTCCTCAATTTCCATGGTGATATTGTGAGGTATCGATGCTTTCCTGGATTTACATTGGTTGGCAGTGATGAGGTCACCTGTAAGCTGAACTCTCACCTGCAGTTTGAGGGACCACCACCAGCATGTGAAGCTCAGTGTCCTGCAAATGAGGAGCGATCTGCCTCCTCTGGTGTGATCCTGAGTCCGGGCTTCCCAAAAAACTACCCCAACTCCCAGACCTGCTCTTGGATCATCAGAGTGCAGCCTTCCTTCACCATCTCCATTTATGTGGAAATGTTCCAGAGCGAGAAGCAGTTTGACGAACTGGAGATTTTTGATGGGCCATCTGGACAGAGTCCGTTGTTGGTGGCTTTGAGTGGGAACCACTCCACACAATTGAATTTCACTAGCAAAACAAACCAGCTTTACCTCAGATGGTCAACTGATCATGCAACCAGCAAGAAAGGCTTCAAAATACGCTACACAGCTGCATACTGCAGTGTGAACGATCCACCCAAGAATGGAGGAGTCATCAATAGGGCGAGAGACCGGCCAGGCAGCAGACTCCAGTATTACTGCAACGCTGGCTATAGGCTCGTGGGTCACAGAAACGCCACATGCCGACTCCATCCCAATGGGCTTTACCAGTGGGACAATCCAGCTCCACTATGCCAAGCTGTATCTTGCGGAGTGCCAGAGTCTCCTGCTAACGGAACGTTCCACGGCTTCCAGTACACGGTGGGCAGTAAAGTGCAGTATCAGTGTGAGGAGGGATACAGGCCCGACGCAAGCAGCCTGCTCACCGCCGTCTGCCTGGAGGATGGCACCTGGAGCAACGTGGCACATCCTTCCCGCTGTTTACCGGTTCAGTGCCCTAACATTGAGAGCATGCTCTCAGAACACATGGTGTGGCGTCTCATCTCGGGTTCGCTGAATGAGTTTGGCGCACGAATAATGCTGAGCTGCTCCCCCGGCTACTATCTAGGGGGCAGGAGGACCATCAAGTGCTTAGCTAATGCAACATGGGAAGGGCTGGAGGAGAAGTCTACCTGCAAGATCATTTCCTGTGGGGAGCTTCCATCCCCTGCTAATGGCAAGAAGATGGGCACCCTGACTACCTATGGCGCCACAGCTATCTTCATGTGTAACACAGGGTACACTTTAGTGGGCTCACACGTGAGGGAGTGTCAGGCTAACGGTCTCTGGAGTGGAGTTGAGACCAAATGTCTGGCTGGTCATTGTGATTCTCCGGATCCAATTGTTAACGGCCACATCAGTGGTGATGGATCCAGTTATAGGGACACGGTCGTGTATCAGTGCAACCTGGGCTTTAGGCTCATAGGGACGTCAGTTCGTATCTGCCAACAAGACCACAGGTGGTCAGGGCAAGCACCTGTGTGTGTTCCCATAACCTGCGGCCATCCTGGAAACCCTGCAAACGGTCGGACAAATGGCAGCGAGTTTAATCTTAACGACGTGGTCAACTTCACGTGCAACACAGGTTATTTGTTACACGGTGCATCCAGAGCGCAGTGTCGCATGAACGGGCAGTGGAGCAACCCTCTTCCTGTGTGCAAGGTGGTAAACTGCTCTGATCCGGGCTTTGTGGAGAATGCCATTCGTCACTCTCAACAGCGCTACCCAGAGAGCTTCAACTACAGAAACACCGTGATGTATCACTGCAAGAGGGGCTTCTATCTGCTTGGCTCCTCCGTCCTCACCTGTCGGTCAAATGGCTTCTGGGACAGATCACTTCCTAAGTGCCTTTCAATATCCTGTGGTGATCCCGGCACACCACCGTTTGCTCTCATGTCGGGCCAGAAGTTCACCAACAGAGCCGTGGTCCATTACTCCTGCAGCCAGGGCCGAACTTTGGTGGGGAATGCCACGCGGCAGTGTCTCGAGGATGGTCGGTGGAGCGGCTCGCCGCCCTACTGCTCAGGTGATAATCCGGGATTCTGTGGCGATCCAGGAATTCCTCCTCATGGTTCTCGTCTTGGGGAAGAGTTCAGGCATAAAAGCCTCCTAAGGTTCACGTGTGAAGCAGGCTACATGCTGATCGGATCGTCCGAGCGCACCTGTCTGCAGAATGGGTCCTGGAGCGGTACCCAGCCCGTGTGTGAAGGTGAGGGTCACATATACCTGTAGAGAAACACACAAGTTCACCAGTATTTCGCTTTGCACTTGAGCTTAATATGATCAGAAAGGCAAACGTTCCTCCGAGCGAACTGTGATCCAGTGCAAGCAATGTCCTAATGAGAAAAATGTATGCTTGAGAGACTAGGGATTTTTACTTTGTGCCTTTAAAAAGGTTTAA

Function

symbol description
csmd1 Predicted to act upstream of or within several processes, including learning or memory; mammary gland branching involved in pregnancy; and reproductive structure development. Predicted to be integral component of membrane.

GO: NA

KEGG:

id description
K17495 CSMD; CUB and sushi domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_01008534_01078153.mRNA True 5947 mRNA 0.46 31 1007163 1078322

Neighbor

gene id symbol gene type direction distance location
CI01000005_00871210_00996843 CSMD1 coding upstream 8310 871210 ~ 998853 (+)
CI01000005_00694797_00695499 CSMD1 coding upstream 311570 694797 ~ 702319 (+)
CI01000005_00296675_00338233 ANGPT2 coding upstream 668930 296675 ~ 338233 (+)
CI01000005_00288278_00288811 NA coding upstream 718121 287027 ~ 289042 (+)
CI01000005_01172014_01174829 NA coding downstream 93625 1171947 ~ 1175210 (+)
CI01000005_01305536_01308522 NA coding downstream 227214 1305536 ~ 1308662 (+)
CI01000005_01348589_01365615 RPS6KA2 coding downstream 270267 1348589 ~ 1366112 (+)
CI01000005_01373895_01396081 RPS6KA2 coding downstream 294826 1373148 ~ 1396897 (+)
CI01000005_01398585_01411469 SFT2D1 coding downstream 319852 1398174 ~ 1411536 (+)
G35534 NA non-coding upstream 194825 809764 ~ 812338 (+)
G35531 NA non-coding upstream 315794 685523 ~ 691369 (+)
G35527 NA non-coding upstream 515414 412157 ~ 491749 (+)
G35583 NA non-coding upstream 617355 388551 ~ 389808 (+)
G36103 NA non-coding downstream 48883 1127205 ~ 1127419 (+)
G36136 NA non-coding downstream 74814 1153136 ~ 1153365 (+)
G36163 NA non-coding downstream 100294 1178616 ~ 1178829 (+)
G36194 NA non-coding downstream 134578 1212900 ~ 1213423 (+)
G36196 NA non-coding downstream 139294 1217616 ~ 1217949 (+)
G35533 NA other upstream 483382 491908 ~ 523781 (+)
G36223 NA other downstream 424821 1503143 ~ 1537804 (+)
G36291 NA other downstream 581411 1659733 ~ 1661032 (+)
G37392 NA other downstream 2644422 3722744 ~ 3723503 (+)
CI01000005_04735429_04736817 COX20 other downstream 3657024 4735346 ~ 4737082 (+)
G39930 NA other downstream 5919222 6997544 ~ 6998340 (+)

Expression


Co-expression Network