CI01000005_05998137_06003757 (PNO1, PNO1.L)


Basic Information

Item Value
gene id CI01000005_05998137_06003757
gene name PNO1, PNO1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 5998137 ~ 6003909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_05998137_06003757.mRNA
ATGGAGTCGGTAACAAACACGACAGCAGAAGCGACAGCTACTATGGACTGTGACGGAAACACAGACACAGACGCGTTTGAGAAAGTGAAGTCGAAGAGGAGTCACAAACGCAAGCGGGACGCGGCAGAAGTGGACATGCAGGCGGAGGGTTCAGTAGCGGCCAAGAGACCGCAGTTCCCAGCCTTATCTGGAGACCAGCTCAGGGGAGGATCAGATGAGATGCGGAAAGTGTCTGTTCCTGCTCATCGTTACACACCCCTGAAAGAAAACTGGATGAAAATTTTCACTCCCATTGTAGAAAACCTGCAGCTTCAAGTGCGATTTAATCTCAAAACAAGAAACGTTGAGATTAAAACGTGTAAAGAAACTCAAGACATCGGTGCTCTGACCAGAGCTGCTGACTTCGTGAAGGCTTTTGTTTTAGGGTTTCAGGTGGAGGATGCACTCGCACTGATCAGATTAGATGAACTGTTTTTGGAAACATTTGATGTCACAGATGTTAAACCTCTGAAAGGAGATCATTTATCCAGAGCCATCGGGAGGATAGCAGGGAAAGGAGGCAAAACTAAGTTTACCATTGAGAACGTGACAAAAACCAGGATTGTGCTCGCAGACACGAAGATTCATATAATGGGATCTTTCCAGAATATCAAAATGGCACGGACAGCAATATGCAACCTCATTCTCGGAAGTCCACCATCAAAGGTATACGGCAACATTCGGGCCGTGGCGAGCCGTACAGCTGAGAGGTTTTAACCTCAACACACAGCTCATGGACTGATCCAGAAATACTGCTGATTTACTGTTAGCCACATTGGCCTGAAAATGTCTTTGAATCATACGACGGGTGATCTTGAACACCAGTGGACCGATTTCTCAACCAATGGATTTTTCTGATCCTTCAGAGA

Function

symbol description
pno1 Predicted to enable RNA binding activity. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in immature eye; midbrain; myotome; retina; and somite. Orthologous to human PNO1 (partner of NOB1 homolog).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K11884 PNO1, DIM2; RNA-binding protein PNO1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_05998137_06003757.mRNA True 908 mRNA 0.46 7 5998137 6003909

Neighbor

gene id symbol gene type direction distance location
CI01000005_05984685_05985981 NA coding upstream 11979 5984685 ~ 5986158 (+)
CI01000005_05946561_05962719 ELOVL5 coding upstream 35366 5946561 ~ 5962771 (+)
CI01000005_05935743_05940360 GCLC coding upstream 57010 5935611 ~ 5941127 (+)
CI01000005_05919567_05933578 GCLC coding upstream 64281 5918402 ~ 5933856 (+)
CI01000005_05909951_05914160 KLHL31 coding upstream 83092 5909874 ~ 5915045 (+)
CI01000005_06013685_06015621 NA coding downstream 9213 6013122 ~ 6015839 (+)
CI01000005_06043738_06050493 PLEK coding downstream 38982 6042891 ~ 6050501 (+)
CI01000005_06105446_06109828 NA coding downstream 100376 6104285 ~ 6109918 (+)
CI01000005_06175112_06195517 BFSP1 coding downstream 169694 6173603 ~ 6196409 (+)
CI01000005_06308859_06313108 NA coding downstream 304894 6308803 ~ 6313486 (+)
G39399 NA non-coding upstream 108035 5889878 ~ 5890102 (+)
G39348 NA non-coding upstream 163962 5833835 ~ 5834175 (+)
G39328 NA non-coding upstream 194481 5803376 ~ 5803656 (+)
G39310 NA non-coding upstream 226429 5770270 ~ 5771708 (+)
G39308 NA non-coding upstream 232785 5738292 ~ 5765352 (+)
G39381 NA non-coding downstream 14817 6018726 ~ 6022310 (+)
G39379 NA non-coding downstream 30385 6034294 ~ 6038148 (+)
G39562 NA non-coding downstream 86989 6090898 ~ 6091138 (+)
G39563 NA non-coding downstream 87690 6091599 ~ 6091818 (+)
G39564 NA non-coding downstream 90914 6094823 ~ 6095047 (+)
CI01000005_04735429_04736817 COX20 other upstream 1261280 4735346 ~ 4737082 (+)
G37392 NA other upstream 2274634 3722744 ~ 3723503 (+)
G36291 NA other upstream 4337105 1659733 ~ 1661032 (+)
G36223 NA other upstream 4460333 1503143 ~ 1537804 (+)
G35533 NA other upstream 5474356 491908 ~ 523781 (+)
G39930 NA other downstream 993635 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 1594080 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location