CI01000005_07447222_07447972


Basic Information

Item Value
gene id CI01000005_07447222_07447972
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7446000 ~ 7448298 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_07447222_07447972.mRNA
GTATAAATATTGTATTAATTACACCAGCTAAAGGAAGCATGTATAGGTTAAGTAATAGAGGACCCAACATTGAGCCTTGAGGAACACCACAGGATATTATGTAATGCCTGGAGCTGTAGGTACCCAGTGTAAAATAGTATTCCCTCCTGCTTAAGATATGAACCAGTCTAAGACAGTACCTGATAGACCGACCCAGTTCTGAAGTCAATTGAGTAGAATCTCAGAGCAAACACACAACAAAAATGACAGTGATGGGAAAAGAGCAGTTAAGAAAGCATCTGATCGTAGGAAAGTAAATATGTTTACATCAGCTCTGCAATTCGGCACTTCGGAAATCACGCTTATTTATATTGTGATTTATACAATACAGATTGATTCAAAGCAGCTTAAGTATTAAACAGGAAAAACCAGCGTCAGTGTTGCAAAGTTCTTAAATTTCAGGAATCAGAATTGTGATTATAATTATAACTTCAATTTCACCTATAAAGCAGCTCATCAGTGTGTTCATGTTTTCACTCGTGTCTGACCTTGACAGACCGTGTGAAGAATTGAAGGTGTCCCAGAGTACACCCACCTATTACGTAATCATCATGTACCAGTGGCAGTTAGAAGGTGTTTTAGAGCCAAAGCAAAGTTTTCCAGAAAAGTTGCTTTGATGAACTGTTTCAAACTACTTAAAAGGAGCTCAAAACAAACTGTTTTGGCCAGATTTAGTTTGAAATGATGTCACGCCAGTTCCTTCTTCTATTTTGCTTGAAGTATATCGGGGCCTTAACCCAACACTTATCCTTCCTGGCCTAAAACTACATTTATTTGTGGGTGGGCCAAAGTTCCCCTTCTTAGTCTTAGCTGGTTCAATGTATTTGATTGGGGTTAGCACTGAACATTGCAGGACAGTAGCTCTCTAGGAGCAGGGTTGGAGACCAATAGGCCAATCAACAATCAACAATCTTGTTCACATGGTCCTCTGCCAAAATAATGGATATCAATTATAATCCATTACATACAGACTAGTGTGTATGCTTGAGAAACTATAATACTAAGATCCACACTCCATCTCTCTTTGCCTGCAACCCAACACAGTATAGATCCTTCTCCTCACCCAGGGTGATTGTTCCCTCTAGGAACACATGTGGACTGAACCCCAACGATTCCTTCAGTGTGTTTTTCCATGTTAGGCTCAGTGCCTTGACAATATCTTGCCTGTCTGAGGATGGTCATCATGGACCCAGAGCTGGCTCACATGCCTGCCATGGACACAGAGACTGCACACAAGCCTGCCACGGACCCCCAGCCAGAGGAGCCATCCGTCCCAGAGCCAGCGCTCACAAAACAGTTCGTCCCGGAGATTCCCTGGTTCTGTCTGGGATCCTCCCTCTTCCGCTGGTCCTGCCCAGCATTGACTGGCTGGTTTCGTCCAGTTCCCTGGCTCCTCCTCATCCTCCTGCTCAGCCATCTCTCCCCAGTGCTCTACCGGCGTGACCATGGTCTCCTGGTCGGCCAGTTTCAACCATGGTCTTCCGATTTAGAGCCCAATAGTTCCAACCCTCCGGCTCCACCTGGACCCTCCGGGCTCATAACTCCAACATTACTCTCTGATCCCTTGGCTCCACCAGGATTCCTCATCCTTCTGGCTCTGCCTTGGTCTGTCGATCCCCTGGCTCTCCTTTGGCTCATTCTGAGACCTTCATCCCTCCAGCTCCTCCATGGTCCTCAGCCCCACTGGCTCCTCCTCAGTCTTCTGATGCCCCCAACTACGCCTTGGTCCTCTAATCCTCTGGTTGCGCCTTGGTCCTCTGAGTCTGCAATTTTGCTCTGGTCCTTCATTCCTCTGGCTCCACCTTGAACTCCACCTCCTCTGCATCAGTCTCCCGATCTACTGGTAAACAAACTCTGTATAGCAGCAGAGCTCTTGGACATGTGGCAGTATTGGACGCTGTGGGAGTAAGAACAGGTTTGCTTGTAGGTTAATGCATCCAAACACACTGCTTGGATGCCTCATTAGATTCATGAACACTAGGATGAGATAAGAATTATGGAGCACTGAACTCCACAACATCTCTCAAGGCCTTGAGGCTGTTCTGCATGAGCAATGCAGCAGTATGCCACTACACACAGAAAATATGCTGAAGGCAAAGAACAGTCCTGATTCTTATTTGGTCTCCTATATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_07447222_07447972.mRNA True 2172 mRNA 0.46 2 7446000 7448298

Neighbor

gene id symbol gene type direction distance location
CI01000005_07402067_07403893 NA coding upstream 42107 7401811 ~ 7403893 (+)
CI01000005_07384171_07397440 NA coding upstream 48317 7383741 ~ 7397683 (+)
CI01000005_07368883_07371354 NA coding upstream 73946 7368883 ~ 7372054 (+)
CI01000005_07337613_07348597 DDX21 coding upstream 97403 7337613 ~ 7348597 (+)
CI01000005_07330665_07337161 NA coding upstream 108839 7330665 ~ 7337161 (+)
CI01000005_07452398_07471837 NA coding downstream 4100 7452398 ~ 7472606 (+)
CI01000005_07474381_07477140 CFAP36 coding downstream 26083 7474381 ~ 7477688 (+)
CI01000005_07500131_07513279 PNPT1 coding downstream 48767 7497065 ~ 7513309 (+)
CI01000005_07516913_07529647 PPP4R3B coding downstream 68375 7516673 ~ 7529647 (+)
CI01000005_07552713_07574463 CCDC88AB, CCDC88A coding downstream 104415 7552713 ~ 7574463 (+)
G40101 NA non-coding upstream 15665 7430106 ~ 7430335 (+)
G40085 NA non-coding upstream 79129 7366611 ~ 7366871 (+)
G40083 NA non-coding upstream 80449 7365270 ~ 7365551 (+)
G40082 NA non-coding upstream 80794 7364986 ~ 7365206 (+)
G40081 NA non-coding upstream 83075 7362513 ~ 7362925 (+)
G40131 NA non-coding downstream 159253 7607551 ~ 7607896 (+)
G40135 NA non-coding downstream 164627 7612925 ~ 7613174 (+)
G40137 NA non-coding downstream 167233 7615531 ~ 7615915 (+)
G39930 NA other upstream 447660 6997544 ~ 6998340 (+)
CI01000005_04735429_04736817 COX20 other upstream 2709143 4735346 ~ 4737082 (+)
G37392 NA other upstream 3722497 3722744 ~ 3723503 (+)
G36291 NA other upstream 5784968 1659733 ~ 1661032 (+)
G36223 NA other upstream 5908196 1503143 ~ 1537804 (+)
CI01000005_07600541_07600974 NA other downstream 149691 7600541 ~ 7602964 (+)

Expression


Co-expression Network