G40176


Basic Information

Item Value
gene id G40176
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6260757 ~ 6261052 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU45541
TTGGTTTATAATTTATGTCAATGTCACTAAAACTATGATAGCTATTCTGGACACATTTAGCTTTTGTTTCACAGAAGAAGAAAAAAAAAAATGACACTGTCCCCCACCCTACCCTAAAAATAAAAAACTAAACTAAATTACACATTAAACAAAAAGTGGCCCACTTTACCCGAATTCACCATATGTAGTGGTTTCAATCATTTACTTTGAAGTGTTTCAATACACATCATTTCTGAAGTATAGCCTACTAGAAAACACTGAAAATCTTGCCCTCAAATTAAAATGGCACTTTACTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU45541 True 296 lncRNA 0.41 1 6260757 6261052

Neighbor

gene id symbol gene type direction distance location
CI01000005_06199038_06247505 PCSK2, PCSK2.L, MGC84034 coding downstream 13252 6199038 ~ 6247505 (-)
CI01000005_06150035_06158315 PROKR1B, PROKR1 coding downstream 102442 6148217 ~ 6158315 (-)
CI01000005_06116268_06121045 NA coding downstream 139712 6115625 ~ 6121045 (-)
CI01000005_06084718_06097051 NA coding downstream 163168 6084265 ~ 6097589 (-)
CI01000005_06037247_06040370 CNRIP1B, CNRIP1 coding downstream 220125 6036706 ~ 6040632 (-)
CI01000005_06302958_06303282 NA coding upstream 41542 6302594 ~ 6303282 (-)
CI01000005_06327379_06328749 NA coding upstream 66231 6327283 ~ 6328767 (-)
CI01000005_06351074_06352066 NA coding upstream 90016 6351068 ~ 6352066 (-)
CI01000005_06354477_06367249 POLH coding upstream 93323 6354375 ~ 6367376 (-)
CI01000005_06409550_06410268 NA coding upstream 148236 6409288 ~ 6410670 (-)
G40165 NA non-coding downstream 27381 6232712 ~ 6233376 (-)
G40158 NA non-coding downstream 39091 6216505 ~ 6221666 (-)
G39600 NA non-coding downstream 115851 6144125 ~ 6144906 (-)
G39587 NA non-coding downstream 138924 6121628 ~ 6121833 (-)
G39547 NA non-coding downstream 201478 6057794 ~ 6059279 (-)
G40179 NA non-coding upstream 3532 6264584 ~ 6264887 (-)
G40229 NA non-coding upstream 28358 6289410 ~ 6289838 (-)
G40240 NA non-coding upstream 34228 6295280 ~ 6295580 (-)
G40196 NA non-coding upstream 131941 6392993 ~ 6402884 (-)
G40188 NA non-coding upstream 137247 6398299 ~ 6476877 (-)
G39515 NA other downstream 426218 5833792 ~ 5834539 (-)
G38415 NA other downstream 1859647 4381238 ~ 4401110 (-)
G38510 NA other downstream 2054549 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 4371481 1883222 ~ 1899867 (-)
G36628 NA other downstream 4596478 1663267 ~ 1664279 (-)
CI01000005_06481721_06483251 NA other upstream 219637 6481355 ~ 6483265 (-)
G40487 NA other upstream 934743 7195795 ~ 7196428 (-)
G40540 NA other upstream 1265169 7526221 ~ 7532148 (-)

Expression


Co-expression Network