CI01000006_04703916_04717922


Basic Information

Item Value
gene id CI01000006_04703916_04717922
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4702871 ~ 4718123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04703916_04717922.mRNA
TTATAAAATGACCTATATACAGTATATTTCAGTTCACTCTTTATCTCCAGGTTATCTTATTTCTACTGTCAAGGCTGATCAAGGATCTGATGGCATCAGTCACAAGAAGCAGTGCAAATCCAATATAATCCAGCTCCAAAAACACTAATCCAGACTCACCGCTAAACAACAATCAGGCATTACAAATCAAGCTTATAATGAATCCACCAGCCATGCACACATATAGCAAACACACATATCTCTTGTTAGGGGTCCTGTGCTGTGGAGTGGCTCAACCAGGAGATGCCGTAACCAACAAAAGTTGCTAAGTGATCCAGTCCCCATGGATAAGAGCATGAAGGTCTCTCCCCTGAGACAGCCATGTCTTACATGCAGCAGTGAACCCCACGTTAGAGAGGCTAAGAATGAAGGCTCCTGGATTGTTTTTCACATCATATGCTTCTCCTCATGGGACTCTTCCATCAGTGTACTATAGCCATGTGCTCTGTTCTGTTTTGTAACCTCCATTCACAGATAAGAATAGTGTGAATGCTATATACCTGCATAACTTTTCTTGTCTCATTTGAGCTCATTGTTCTTGCCTAAAATTAATACATGCTAACTAACTGCACTAATAATAATGGTAACCAAGGTGATAGATGAGTGGCAGGAATCTGAACACATGACAATAGAAAAACAAACTGAAAGTCCATAAAAAACGAAACTAACTGAAGATAACTGTGACAACTGTAATGTAGACACATGAATTTTCTGTAAAGCTGCTTTGAAATGATATGTATTGTGAAATACAAATAAAGCCATCAGAAACACTTAAAATTCGTCTTTACTGATACAAACTATATTTAGAAATTAGCTCCTATTAACTCACATTATGATGGATATCATTATTTTAATTAAAACAGTACAAAAATTATATAAAAAAATAATCATATACAGTACCATACAGTGCCCCCCTCTGGCAAGGCGCAACTTCACGCCATAATGAAATGATGGCATAGGGAGGGATGGAGGGGACTTGGGAGGAGGATGTGGATGAGGCGAAGGGATGGTGATGGCAGGACGACGAGACCCAGATGGTACAGGTGGAGGAAGTCCGATGGCGCAGACCCAGAGCTCCACAGAACCGACAGTCCATGGCGGAGACGAAGGGAGCCACACGCAATTCACTGTGACGAATGAGCGGGAAACCATGGCAACAGCAGGGAACATGCGGTTTGCCATTCTTCAGCTGTACGATCAGAACGACAGTTTGGCTGACCAGCAGAGTGCTAACGAAAGTCCATTGGCACATTACAAGGGGGCTTGTTTAGTGGATATGTGGGACAACTTGGCCACGCCGTGCCCTGCTGAGCCACACGGATGTGACTCAGAGTGTAATAAGCAGCGAATGAGGGCATTAAGACTGTGTGACAGTGTTCCAAAGGCCCACTTTACGTCTGACAGGGGGGTGTTAAAGGTCAAGGCCACATCCAGCGCTGTTATTCCTCTAATTTCACTCCCTGTCAGAATCGCTCTGCTCTCTGTTTGTGTGAAAGGTTTAGGGCATTTTATTCAGGCCCATCAACCTACAATATGAATTGCATTATTAACAAAACATATAACTTATACTTAAAGTGCTTACTCAAGTGCAAATATAACATTCATTAAGGCGAAATATGCTATTAGTGAAGGAATTAATCACAAATTGTGCTTACCCTTGACTTTATATTCTGCAAAGAACTGCGTCCTTAAACTGCATGCAAATTTGGTAGAGTGTCAGCCAACTTAAAATCAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04703916_04717922.mRNA False 1777 mRNA 0.42 3 4702871 4718123

Neighbor

gene id symbol gene type direction distance location
CI01000006_04538991_04543506 RFC2 coding upstream 159267 4538991 ~ 4543604 (+)
CI01000006_04509718_04523326 NFRKB coding upstream 179131 4509718 ~ 4523740 (+)
CI01000006_04493236_04507301 ST14B coding upstream 194673 4493236 ~ 4508198 (+)
CI01000006_04467086_04477770 PPME1 coding upstream 224938 4467086 ~ 4477933 (+)
CI01000006_04455069_04463903 SMS coding upstream 238946 4455069 ~ 4463925 (+)
CI01000006_04776793_04779651 IGSF9BB, IGSF9B coding downstream 58670 4776793 ~ 4779687 (+)
CI01000006_04786488_04866122 IGSF9BB, IGSF9B coding downstream 68302 4786425 ~ 4866504 (+)
CI01000006_04931074_04985139 ARHGAP32, ARHGAP32B coding downstream 212951 4931074 ~ 4986173 (+)
CI01000006_04989318_04992332 SC5D coding downstream 271195 4989318 ~ 4992841 (+)
CI01000006_05169144_05174432 NA coding downstream 449994 5168117 ~ 5175303 (+)
G41970 NA non-coding upstream 1692 4700924 ~ 4701179 (+)
G41969 NA non-coding upstream 7158 4695206 ~ 4695713 (+)
G41965 NA non-coding upstream 15604 4687044 ~ 4687267 (+)
G41885 NA non-coding upstream 68670 4632573 ~ 4634201 (+)
G41940 NA non-coding upstream 72770 4629831 ~ 4630101 (+)
G42002 NA non-coding downstream 251532 4969655 ~ 5039311 (+)
G42181 NA non-coding downstream 593909 5312032 ~ 5312639 (+)
G42183 NA non-coding downstream 596580 5314703 ~ 5314958 (+)
G42197 NA non-coding downstream 621598 5339721 ~ 5339921 (+)
G42217 NA non-coding downstream 673810 5391933 ~ 5392138 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 966893 3734554 ~ 3736035 (+)
G41591 NA other upstream 1863450 2836167 ~ 2839421 (+)
G41424 NA other upstream 2042301 2645662 ~ 2660570 (+)
G41170 NA other upstream 3007050 1692065 ~ 1695821 (+)
G40768 NA other upstream 4209845 488407 ~ 493026 (+)
G41996 NA other downstream 399083 5117206 ~ 5124149 (+)
G43896 NA other downstream 1051966 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 1390361 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 1403912 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 2448666 7166778 ~ 7168925 (+)

Expression


Co-expression Network