CI01000006_04989318_04992332 (SC5D)


Basic Information

Item Value
gene id CI01000006_04989318_04992332
gene name SC5D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4989318 ~ 4992841 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_04989318_04992332.mRNA
ATGACCAGATCTGACATCTGTCCAATGAGATGTCAAGAAACGAGCTCGCGCTGTGAGGAAGTGAGCCGCTATTGGCTGCGTCCGTTTGTGTTTCTACAGCGAAAGCAGAAGGACGGCCTCTGTGAAGGCTTTAACCTCAGTTATTTTCTTCGCTGGCTTGTCTTCAAAAGCACCTTTACAGATTATTACTTCTTCACTCCATATGTGTATCCCTCATCATGGCCCGAGGACGAGCCTCTGCGACAGATCATCGGCTTGATGGTGGTCACCAACCTGGGTGCTGCAATCTTATATCTAGGCCTGGGTGCTTTGAGCTACTTCTTTGTTTTTGACCACAAATTAAAGCAACACCCTCAATTTTTGGAGAACCAGGTGCAGCGTGAAATAAAGTATGCTTTGTGGTCTTTGCCCTATATCAGCATACCTACAGTAGCACTGTTTTTCGCTGAGGTCAGAGGATACAGCAAACTGTACGACAGTGTCGATGAATCACCCCTCGGTTGGTCAGGGCTGATTTTCAGCATGGTCTCTTTCCTGTTTTTCACTGATATGTGCATTTACTGGATCCACAGATTCCTTCACCACAAGTTGATATATAAGTTTTTTCACAAACCACATCACGTGTGGAAGATCCCCACTCCATTCGCCAGCCACGCTTTCCACCCCGTGGACGGATTTCTTCAGGGCCTGCCTTACCACATCTACCCCTTCCTCTTCCCTCTACACAAGGTCCTGTACTTAGTCCTGTACGTGTTCGTCAACATATGGACCATCTCCATCCATGACGGGGACTACCGCGTGCCAAACCTGATGGAACCAATTATCAACGGTTCAGCTCACCACACTGACCACCATCTCTTCTTTGACTACAACTACGGGCAGTACTTCACCCTGTGGGACCGCATCGGAGGCTCCTACCGCTACCCTTCAGCCATGATGGGGAAGGGGCCGCACGACCAAATCAAGAAACTGATGGCAGAAGGAAAGCTGAGCTCAAACAGCATAAACAGCCACACTAATAATAATAAAAATAGTGTTCATGTCAAGGAAGAGTAGGTAGGCACATAAAAGCATCATGAATGGGTTTCAAGGTAAGATTTCTGCTCTTAAAATATTTCCTTATTCATAAGAGACTCTGAAACTCTACTTAGCACTAAAATGATCAGTTATGCATACAGTTGCCAAAAGGAAACAAGGACAAAATTTGCCAAACAGATACATTCACTATGGCTACCCTGTTGGTATTCTTGCCTTTGTGTAACTTAATATGAATTACTTAAATTAACAGGCTTCTATTAAGTTAGCGTCTATAATTTTGCAGTCATAAACATTCAAAGAATGTATGAAGATTGACAGGACTGTCCCTTCACGTTACCTCAGTTCACCTTTCTGTTAGCAGTATGTCGTTGTTAAAGTAAACAAGACACTGATTTCCTCCATAGCTCCTTTCATCCATAAACTTATCAATGGCTCAGAGGCCAGGTGAAGGTTTTACTGATCTAGTCATCTTGTTTTAAAAGAGATTCTGTGGTTTGCTTTTGATATGAAATGCACATTCTTTCCAA

Function

symbol description
sc5d Predicted to enable C-5 sterol desaturase activity. Acts upstream of or within response to yeast. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human SC5D (sterol-C5-desaturase).

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process

KEGG:

id description
K00227 SC5DL, ERG3; Delta7-sterol 5-desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_04989318_04992332.mRNA True 1565 mRNA 0.44 5 4989318 4992841

Neighbor

gene id symbol gene type direction distance location
CI01000006_04931074_04985139 ARHGAP32, ARHGAP32B coding upstream 3145 4931074 ~ 4986173 (+)
CI01000006_04786488_04866122 IGSF9BB, IGSF9B coding upstream 122814 4786425 ~ 4866504 (+)
CI01000006_04776793_04779651 IGSF9BB, IGSF9B coding upstream 209631 4776793 ~ 4779687 (+)
CI01000006_04703916_04717922 NA coding upstream 271195 4702871 ~ 4718123 (+)
CI01000006_04538991_04543506 RFC2 coding upstream 445714 4538991 ~ 4543604 (+)
CI01000006_05169144_05174432 NA coding downstream 175276 5168117 ~ 5175303 (+)
CI01000006_05196006_05199842 NA coding downstream 202491 5195332 ~ 5200579 (+)
CI01000006_05276965_05313266 NA coding downstream 283915 5276756 ~ 5314230 (+)
CI01000006_05380873_05439031 NA coding downstream 387478 5380319 ~ 5439517 (+)
CI01000006_05469329_05478118 NA coding downstream 476176 5469017 ~ 5478629 (+)
G41970 NA non-coding upstream 288139 4700924 ~ 4701179 (+)
G41969 NA non-coding upstream 293605 4695206 ~ 4695713 (+)
G41965 NA non-coding upstream 302051 4687044 ~ 4687267 (+)
G41885 NA non-coding upstream 355117 4632573 ~ 4634201 (+)
G42181 NA non-coding downstream 319191 5312032 ~ 5312639 (+)
G42183 NA non-coding downstream 321862 5314703 ~ 5314958 (+)
G42197 NA non-coding downstream 346880 5339721 ~ 5339921 (+)
G42217 NA non-coding downstream 399092 5391933 ~ 5392138 (+)
G42220 NA non-coding downstream 402078 5394919 ~ 5395288 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 1253340 3734554 ~ 3736035 (+)
G41591 NA other upstream 2149897 2836167 ~ 2839421 (+)
G41424 NA other upstream 2328748 2645662 ~ 2660570 (+)
G41170 NA other upstream 3293497 1692065 ~ 1695821 (+)
G40768 NA other upstream 4496292 488407 ~ 493026 (+)
G41996 NA other downstream 124365 5117206 ~ 5124149 (+)
G43896 NA other downstream 777248 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 1115643 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 1129194 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 2173948 7166778 ~ 7168925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019601 sc5d coding NC_007132.7 CM002905.2 24531679 ~ 24535510 (-)