CI01000006_08780644_08787820


Basic Information

Item Value
gene id CI01000006_08780644_08787820
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8780117 ~ 8787820 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_08780644_08787820.mRNA
GACACAACTAAAGTGGTTGAATATGCAACCTATTCAGCTAATGCCAGTCCGAAAGATGACAAATTTGACATATCGCAGATAGCTAAGGCCATCTGGATGATGGAGCGTGCGGTGGTTAATAATATTTATGGAGAAATTAGTGATGATTTCCTGTACTTTGAGGATCCAGCTGATGAATTTCGAGGAGAGAAGGGCACTCTTCTCCCGCTGTGGAAATTTCAGTACGAAAAAGCCAAAGGTCTGTCTGTGACTGCCCTCTGCTGGAGTACTGAATTCAATGATTTTTTCGCCGTTGGTCTTGGGTCATATGGATATCCTCATGAGGATCCTGGTGGCATGCTTCTCTTTTACACCGTGAACATGCACACTTTCCCAGAATTCTTCTTTGACACGGAATCTGGCGTAATGTGCGTAGACATCCACAAACCACAGGGACACCTGGTGGCTGTGGGTTTCCATGATGGCTGTGTTGCTGTGTACAGCCTGCTGAGAAAGAAAAAGAAGCCCATTTATAACAGCAGAGCCAGCTCCGGGAAACACAGAGGCCCTGTGATGCAGGTGAAGTGGCAGCAAGATGATTTGGACAATAATCACAACTTCTTCTCTGTGTCCGCTGATGGACGAGTGGTGTCTTGGACTCTAAGAGAGGTTAATGGATGCCAGTCATATGGATTTCAGCATGAACTAGTCTTCAAAGACATCATCAAACTCCCAGCCATGGACAAAGTTCCTGATGACCTTAAGGATGTCATTCCCACACCTGGAATATCTTTGGACTTTAATAAAAAATATGAGTTCCTTTATCTTCTCGCCTCTCAATCTGGAACGATTTACAAGGGCTCCATATATACTTCTAGCACTTTCCTGGATGAGTATGATGCACACTTCCTCATGAGTGTCATGTGTGTGAGGTGGAATCCCTTCCATTCCAGAGTTTTCATCTCCTGCGGCATGGACTGGATGGTGAAAATTTGGAATGAGAAAATAAACTCTCCTGTGTTCACCTTTGACCTGAGAGCTGGTGTGACAGATGTGGCCTGGGCTCCATACTCCTCCACTGTCTTTGCTGCTGTCACCACTGATGGAAAGGTTCATGTGTTCGACCTCAGTGTCAACAAATATGAGGCTCTCTGCCAACAAGTAGTGGTGTCCAAGAAGAAAACTCCTGTGAAAATTGAATTCAACCCTGTCCATCCCATCATCATCGTGGGCAATGACCGCGGCCATGTCGTCAGCCTCAAGCTCTCGCCCAACCTCCGCAAGAAGCCTAAAGTAATAAAACAATATCATCCAGATATCAATCAGTTAGACTGCACTGTGGGAAAAGGGCTTTCAGAACAAACTGATGCAGAAAAATAAATTACATGACTGAAGGTCCTTGAAGTTTTGCAGTGAATCCAGAGTGAACAAAGTCAAATGATATGAATAATTCAGGTTCCCATTCGGAAATGTAGATAAATCTACACTACTGTTACACTAGAAGAGGTTTCTTATGCTCACAATGGCTGCATTTATTTGATCAAAAATACAGTTGAAAATACCTGTTTTTTATTTTAATATATTTTAATCTATGCCTGTGATGGCAACGCTGAATTTTCAGCATCCACTTCAGTGTCACATGATCCTTCAGAAATAATTTTAATATGCTGATCGAATGCTCAGGAAATATTTATTCTTATTATCAATGTTGAAAACAGTTTTTGTGAAAACGGTGATACATTTTTTCAAGGTTCTTTGATGAACAAAGTTCAAAAGAACAGCATTTATCTGAAATAGAAAATTGTATCATTATAAATGTCTTTACTGTCACTTTTGATCAATTTATGCACTTTTGCTGGACAAAAGTATTTGTCTATGACATTTTTCAAGCTAATGATATCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_08780644_08787820.mRNA True 1886 mRNA 0.41 12 8780117 8787820

Neighbor

gene id symbol gene type direction distance location
CI01000006_08749304_08751622 BRD3A coding downstream 26434 8748737 ~ 8753683 (-)
CI01000006_08736720_08740065 NA coding downstream 40052 8736660 ~ 8740065 (-)
CI01000006_08675642_08697114 NA coding downstream 82248 8675455 ~ 8697869 (-)
CI01000006_08557710_08600107 VAV2 coding downstream 180010 8556851 ~ 8600107 (-)
CI01000006_08512030_08512578 NA coding downstream 267539 8511314 ~ 8512578 (-)
CI01000006_08797043_08827629 RXRA, RXRAA coding upstream 9016 8796836 ~ 8827686 (-)
CI01000006_08831292_08836066 NA coding upstream 43135 8830955 ~ 8836618 (-)
CI01000006_08866054_08871468 NA coding upstream 78199 8866019 ~ 8871468 (-)
CI01000006_09019351_09023876 STOM coding upstream 231456 9019276 ~ 9023876 (-)
CI01000006_09161066_09181709 TSC1B, TSC1 coding upstream 373107 9160927 ~ 9181709 (-)
G46089 NA non-coding downstream 281315 8481249 ~ 8498802 (-)
G46018 NA non-coding downstream 503788 8198232 ~ 8276329 (-)
G45986 NA non-coding downstream 699861 8080018 ~ 8080256 (-)
G45985 NA non-coding downstream 700421 8079468 ~ 8079696 (-)
G45970 NA non-coding downstream 740168 8039680 ~ 8039949 (-)
G46199 NA non-coding upstream 188851 8976671 ~ 8976871 (-)
G46102 NA non-coding upstream 211273 8999093 ~ 9008209 (-)
G46076 NA non-coding upstream 226311 9014131 ~ 9016971 (-)
G46208 NA non-coding upstream 236319 9024139 ~ 9026251 (-)
G46257 NA non-coding upstream 308639 9096459 ~ 9096705 (-)
CI01000006_07500281_07507754 NA other downstream 1269161 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 1803245 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 4218049 4559509 ~ 4562068 (-)
G43549 NA other downstream 4424689 4352510 ~ 4355428 (-)
G43102 NA other downstream 5846133 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 1695036 10453613 ~ 10484006 (-)
G47658 NA other upstream 2243091 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 2862543 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 3546589 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 3562939 12569205 ~ 12582487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location