CI01000006_11143743_11157316 (MAN1B1A)


Basic Information

Item Value
gene id CI01000006_11143743_11157316
gene name MAN1B1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11143743 ~ 11158587 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_11143743_11157316.mRNA
ATGTACTCGCCACAGAGGAAGGACTTTGTTTCTCTGACGCTGGGAGACCAACACAGCCACAGCTACACCAACGGCAAGCACCGGAGACAGTCCTGCTGGAGGAAATGGAAGCAGCTGTCTCGGCTTCAGCGCAGTCTGATTCTTTTCCTGCTAGCCTTTCTCTTCATCTGTGGGATTCTTTCCTATTCCAGTCTGGCGGAGCAGTGGAGAGGGCTCTCTGACAGATCGTTGAAGGAGGACTGGGTTGAAATGGATAACAGAGGTCTCAGGCCCATTCCTCCTGGCCTCGTCCCAAAGCTTCCACCAGGAGTTGTCCCTGGGGTCCAGGACGTCCCACCAGAAGTGCTGCCAGAGCTTCAAAGACCAAGCATTCCAATACTTCCCAAACCTCCAGCTATGAGGAAGCCCCCTAGCAAGCGTGGTCCTCCTGCTCTACAGAAGCGAGGGAATGTGTCAGATTGGCAGGAGAAAGATGGAGAAGAACCCGTGATCAAGAGAGAAGATGACGAAGGGAAAGAAGCAAAAACAGTCATTAGCTGGCGCGGGGCGATGATCGAGGCAGAGCAGGGGACAGAGCTTCAGTCCACCGCCCATGGAAAAGTAGGAACAGTGGCTAATGCAGAGGGAGCTGCCAACTTAAAACCAGTCACAGAGAAGCCCGTGGATCGTGTGGAGGTGGTGCGGGAGGCATTCAGGCATGCGTGGAAGGGCTACAAGGCTTTTGCTTGGGGCCATGATGAACTGAAGCCCATATCTAAGACTCATGGAGAGTGGTTCGGTCTGGGCCTCACTCTCATAGATGCACTAGACACCATGTGGATCCTGGGCCTGAAAGAGGAGTTTGCAGAGGCCAGGAAGTGGGTCGAGACAGAATTATCTTTTTCCAAGAATGTGGATGTGAATCTTTTTGAGAGTACCATCCGTATTTTGGGGGGTCTCTTGAGCACATACCACTTGTCCGGGGACACACTTTTCCTGGATAAAGCTAAAGACATTGGCTTTAGATTAATGCCTGCCTTCAAGACTCCATCTAAAATCCCCTACTCTGATGTGAACATTGGTAAAGGAACTGCTCACCCTCCACGCTGGACCACAGACAGCACAGTCGCAGAGGTGACCAGCATTCAGCTGGAGTTCAGAGAGCTCAGCCGACTCACACAGGACCCGCAGTACCAGAATGCAGTGGAGGAGGTGACCAGACAGGTCCACAGACTGGAGGGAAAGCGTGATGGTCTGGTGCCCATGTTCATCAACACAAACAGTGGGAAATTCACACGGCGAGGGGCCTTTACTCTGGGGGCCCGTGCGGACAGCTACTACGAGTACCTGCTCAAACAGTGGCTACAGGGTGGCAAGAAAGAGACTGAGCTGCTGGAGGACTATCTTCAGGCTATAGAAGGTGTCAAAAAGAATCTCTTAAGACAGACTTCTCCTAGTAAACTGACCTTTGTTGGGGAGCTGTCCAATGGCCGCCTCAATCCCAAGATGGATCATTTGGTGTGTTTTCTTCCTGGCACGCTGGCTCTCGGTGCTCACAACGGCCTGCCCGCTGATCACATGGACCTGGCTCTGCAGTTGATGGAGACGTGCCATCAGATGTATGCACAGATGGAGACGGGCCTGAGCCCAGAGATCGCTCACTTTAATCTGCAGAACCATAACGGACGAGACATCGATGTGAAGCCTGCAGACAGACACAACTTGCTGAGACCCGAGACTGTTGAAAGTCTTTTCTACATGTACAGATTCACCAAGGACAGCAAATACAGGGACTGGGGCTGGGACATACTGCAAAGTTTCAACAAGCACACCAGAGTCCCCAGTGGGGGCTACACCTCCATAAGTAACGTCCGTGACCCACTGAACCCCGCACCCAGAGATAAGATGGAGAGCTTCTTCCTGGGCGAGACGCTGAAGTATCTCTTCCTCCTGTTCTCTGACGACAGCGAGCTGCTCAGTCTGGATAAGTACGTGTTCAACACTGAGGCCCATCCGCTGCCCATATGGCCCTCGGCCTCATGAGGGGAAAAGAAGCCGGAATCATGCCAGTCCTCTCTTGCAGTGATGTTTGGGTTTCAACAGGAAATGATGCAGGCTTACACAGGAAGTGACCCCTCAGAGCTGCTCTGCAGGAAGGTTTCTGCTCTAAACTGAGGTGGCGGGTTATGCATCGACCTTTAACTGTGCATTTGAGCTTTATTTAAATGCAGTGAGACTCTTTACTCACCCAGAAGAACAAGTTTGGTGGAGGTGTTACTCATTATGGGTGGTGAAACATCTCAAATATTGGTTCCTCTTTTTACTCTATACTTAACAAGACTTCACTTATGTTTGAGCTCATGGGACAACTGCAAAGTGTTGGACAAGCCCATGCAGCTGCCACAATTTTTAGATGTCTCATCTTCCATATTTGGGACAGAAACATTAGTGTCAGCTCCATAAATCACAAGGCAGACTGCTGAAATCACACACTGTGAAAAATGCCAAGCACTTTGTAAAATGAAGACTTCTTTTTTTGTTAACGTTGTTATTTCTGTATGTATAGATGGATGCTCTCCATGTGAGTGCTGTTACAGAAGGAAACTGCGTGTCAATTTCTAAATGTCTCCCTTATGTGAGAGTCAGGATGCATTAGGGAACATATTGGGTACTTTACAGATCATCTGGAGATTTATTTGGTAGCCCTCTGGGATTGTGTAGTTTTCTGTTATTTATGTTGACTTTAGTGAGCGTACTTCAGTGAACGCTAATGATTTGATGTAGCAGATGCCGCCCGAAGCCCTGCTTGTGTTACTAGATTTACATTGTTATCTACAAATTTTGAAAGCTGTTGCACGGCACTGGATGCTGTGATGCTACATTTAGCTGAACCGTGATCAAATGTGGATATATGTTCATTTATTATTTAATTCTAATTTCACAGCACAACTAATTGAAAACATTGCTTGAAAGATGAACCGTTTCTCATCGACAGTCAAGATTGGTTCTGATATTAGAGCTACAAAATTTCCTTTGTCATATTAGAGTGCAGTCATACTCTATATCAGCCCACTGCCATCTGTTTTAATATGTTAGATGATTGTAGACAGGTTTGAAACGATTCAATGAATCACTCACCCAACAATGAAATGAAAACGTCGTCATATATTCACCCTCACGTCGTTCCAAACACGAATTACGTTCTTTCTTCCTGGTCAATTCTGAATTAATTTCTCCTTTTGTGTTCCAAGAAAGAAGGTTGTACAGGTTGTAAATGATCACAGAAGTTTGATTTTTAGGTGAACTGTCTTATA

Function

symbol description
man1b1a Predicted to enable mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to be involved in N-glycan processing and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human MAN1B1 (mannosidase alpha class 1B member 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_11143743_11157316.mRNA True 3293 mRNA 0.48 13 11143743 11158587

Neighbor

gene id symbol gene type direction distance location
CI01000006_11122190_11137711 NA coding upstream 5987 11122190 ~ 11137756 (+)
CI01000006_11069210_11101466 NA coding upstream 42254 11068275 ~ 11101489 (+)
CI01000006_10921053_11064211 NA coding upstream 79532 10921053 ~ 11064211 (+)
CI01000006_10911878_10918372 NA coding upstream 224764 10911576 ~ 10918979 (+)
CI01000006_10901059_10906327 EHMT1, EHMT1B coding upstream 237176 10901059 ~ 10906567 (+)
CI01000006_11178091_11284993 DFNB31, DFNB31A, WHRN coding downstream 18549 11177136 ~ 11285031 (+)
CI01000006_11298514_11313005 NA coding downstream 139785 11298372 ~ 11313385 (+)
CI01000006_11362605_11384441 NA coding downstream 204018 11362605 ~ 11385087 (+)
CI01000006_11395393_11412606 NA coding downstream 236536 11395123 ~ 11412606 (+)
CI01000006_11429439_11432136 NA coding downstream 270187 11428774 ~ 11432797 (+)
G47252 NA non-coding upstream 317810 10825660 ~ 10825933 (+)
G47175 NA non-coding upstream 338690 10801586 ~ 10805053 (+)
G47213 NA non-coding upstream 471151 10664966 ~ 10672592 (+)
G47220 NA non-coding upstream 527725 10615325 ~ 10616018 (+)
G47218 NA non-coding upstream 576444 10566654 ~ 10567299 (+)
G47184 NA non-coding downstream 128899 11287486 ~ 11290495 (+)
G47164 NA non-coding downstream 155936 11314523 ~ 11321670 (+)
G47163 NA non-coding downstream 228616 11387203 ~ 11392950 (+)
G47298 NA non-coding downstream 256169 11414756 ~ 11415179 (+)
G47299 NA non-coding downstream 256851 11415438 ~ 11415704 (+)
G47145 NA other upstream 631937 10485358 ~ 10511806 (+)
G46652 NA other upstream 984492 10156579 ~ 10159251 (+)
G45416 NA other upstream 2309046 8818814 ~ 8834697 (+)
G45355 NA other upstream 2931355 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2943598 8197881 ~ 8200145 (+)
G47159 NA other downstream 257642 11416229 ~ 11521703 (+)
G47318 NA other downstream 465680 11624267 ~ 11638252 (+)
G48094 NA other downstream 1119033 12277620 ~ 12279541 (+)
G48081 NA other downstream 1218419 12377006 ~ 12384827 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location