CI01000006_10921053_11064211


Basic Information

Item Value
gene id CI01000006_10921053_11064211
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10921053 ~ 11064211 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_10921053_11064211.mRNA
TACCTGATCCTCACAACCATCATCGCCAACTGCATCGTACTGGCCCTCGAACAGCATCTCCCAGCCATGGACAAGACCCCCATGTCTGAACGCTTGGACGACACAGAGCCCTACTTTATCGGAATATTCTGCTTTGAGGCCGGCATTAAGATCATCGCCCTGGGCTTTGTGTTTCACAAAGGCTCTTACCTACGCAACGGCTGGAACGTAATGGACTTTGTGGTCGTTCTGACAGGAGCAGGTTGGGTTGATGCCATCGTCTGTGGTTGGTTCTTTATCCCACTCAGAATATTCAGGACTCCGATCAGTGCTGAGACTGCTTATCCAGGAACACAAAGTGCTGACTTCAAAGAGTCATGTTCAATTCTGATGTCTTTCATGTGTTTTGGATCCACTGAGACAATGAGTTGCTTCAAAGTGGTAGAGACCTGGCCTTGCTTTGTTTGTGCCGGAGTCAAAGAGATTCATAATGGAGTACCATTTGAATGTGTGCCAATGTTTCTTGTTGCAAAGACAGTTGGTGATTACCCATGTGGTATGGAGAAATCCGCAAGACAGTGTCCCAATGGAACAACGTGTAAGGAGTACTGGAAAGGACCCAATTTCGGCATCACAAATTTCGATAACATCCTCTTCGCCATCCTCACAGTCTTCCAATGCATCACTATGGAAGGATGGACTGATGTACTATATCATGCCAATGATGCCTCTGGGAACACCTGGAACTGGCTGTACTTCATCCCTCTCATCATCATTGGCTCCTTTTTTATGCTTAACCTCGTCCTGGGTGTCTTATCAGGGGAATTTGCCAAAGAAAGAGAGCGAGTGGAAAAGAGGCAGGAGTTCTTGAAGCTCCGCAGACAGCAGCAGATTGAGAGAGAGCTCACTGGATACCTGGAGTGGATCTGCAAGGCAGAGGAGGTTTTGCTGGCAGAGGAAGACCAGAATGCTGAGGAGAAATCACCTCTGGATGGTGCGTGGTACAGGAGGAAACAAAACAACTCAGGTGAAAAGAGGGCAAGGGTCCATGGGGCTGTCCTGAAAAGAACAAAGACTAGAAAGGGTAGAAACGATCTCATCAGTGCTGAAGAAGGAGAGGAACATTTCACAGACATCTCCTCTGTCGCACCACCTGGATCACCTTTCGCCCGAGCTAGCCTGAAGAGCAGTAAGAACGATAGTTCCTCATACTTCCGTCGAAAGGAAAAGAGGATACGCTTTTTCATCCGGCGGATGGTGAAGGCACAAAGTTTCTACTGGATCGTTCTCTGCTTGGTGGGATTGAACACGATGTGTGTGGCTATCGTCCATTATGACCAGCCTGAGGGGCTCACCAAGGCCCTGTACCTGGCAGAGTTTGTATTCCTGGGTCTGTTTCTGACAGAGATGACTCTGAAGATGTACGGCCTGGGGCCCAGAAACTACTTTCACTCCTCGTTCAACTGTTTTGACTTTGGGGTAATTGTGGGGAGTATATTTGAGGTGGTGTGGGCAGCAATCCAGCCTGGTGCCTCTTTTGGGATCAGTGTTCTGAGAGCCCTGCGCCTGCTCCCCACTTCTATATGTTGTGGTCTGTATGTTAATTTTTTTCTCTTTCTTTCTCTTTGCAGGTATTGGAACTCTTTGCGGAATCTGGTGGTTTCACTGTTAAACTCCATGAAGTCCATCATCAGCTTGCTCTTCCTCCTCTTCCTCTTCATCGTGGTGTTTGCTCTGCTAGGCATGCAGCTTTTCGGGGGCCAGTTTAATTTTGAAGACGAAACACCCACTACAAATTTTGACAGCTTCCCTGCAGCCATAATGACAGTATTCCAGATTTTGACAGGAGAGGATTGGAATGCAGTGATGTATCATGGCATTGAGTCCCAGGGTGGCGTCCGGGGTGGAATGTTCTCCTCGGTCTACTTCATTGTTCTTACACTTTTTGGAAACTACACACTTCTCAATGTATTCTTGGCCATTGCTGTGGATAACCTCGCCAATGCACAGGAGCTGACAAAGGATGAAGAGGAACAAGAGGAGGCAGCGAAGAAGAGCATGGCTCTTCAGAAGGCCATGGAGGTGAAGGAGGTCAGCCCCATGTCTGCTGCCAACATCTCAATAGCAGCTAAAGAGCAGCAGAGGTCACTGCAGAAGATGTCCATATGGGAGCAGCGCACCAACCAGCTGCGCAGACACAATCTGCGCAACAGCAGCGAGGCCCTTTACAACGAACTAGAGCCCGAAGAGCGTCTGCGCGTGTCTTCTGCACTGCATCTGCGGCCCGACATGAAGGCCCACCACGATCGGCCACTGGTGGTGGAACATCGAGACGGCACTGTGGACAGTTCCAAGACTGATGGAGATGGAGACACTCGAGAGTGTCAACCGTCCTCTGCAAACCCAAGGAAGCACCATCGTTGTCGAGGAGAGAACGGAGATGCAGGGGAGGGGCGGCACCATAGACACCACAGCCGAAACAGAGAGCACCAGGGCGGCCTGGAGCGCAGCTGCAGTCAGGATGGGGGACAAAGGAACCACCAAATGGCTGGCTCTCCTGAGGAGGGCATAGGGATAGAGGAAAGAGAACACAGACACCACCATTCTCGCCGATCCAGAGAGCTCAACGGGAATGGCAACGGCACGATCGGTAATGGAGGCAGGGGTGAGAGTAGGATACGAGGTCACAGAGAGGGCGAAGGAGGGAATGGAGAGAGGAAGAGACACCGGCCCCGCGTTAAAGCCCAGTCCACACTGGATGGAGAAGAATGCAGGGAGAATGGAAAACGCAGATGTATAGCTTTCCATTATTACAGGGGCAGACCGACAGAAACAGACAGCCTAGCCACCAGCCCTCTCCAGTCTCCTACTGATGAGAAGCCAGAAGTCACGGATAATCTAAAAAACAGCACCAGAGCAGGCCCAACCGGAGTCAACATCCCCGTCACCATAACTGCCCCGCCAGGAGAGACCATAATCATTCCCATGAACAACATTGATGGTGACAGTCTACTGCTGAACGAGGAAAAGAAGGATCTTGATGAGCTAAATCAGAATGCGCCCAAACACATTCTGCCATACAGCTCCATGTTTGTGTTTGGCCCAACTAACCCAGTGAGACGGCTGTGTCATTATGTGGTGAACCTGCGGTATTTTGAGATGTGTATCCTCACAGTCATCACCATGAGCAGCATCGCTCTCGCTGCTGAAGACCCTGTGCAGGCCCATGCCCCCCGCAATGACGTGCTGAAATACCTAGATTACGTCTTCACTGGTGTGTTTACATTTGAGATGGTTATAAAGATGATCGATCTTGGGCTGCTGTTGCATCCTGGGTCTTACTTCAGGGACCTGTGGAACATACTGGACTTCATCGTAGTCAGCGGCGCTCTGGTGGCCTTCGCCTGCTCAGGAACTAAAGGCAAGGACATCAACACCATCAAGTCCCTAAGGGTCCTTCGAGTCCTGAGGCCCTTGAAGACCATCAAACGTTTGCCTAAACTCAAGGCTGTGTTTGACTGCGTAGTGAACTCTCTGAAGAATGTGCTCAACATCCTCATCGTTTACATCCTCTTCATGTTCATCTTCGCCGTCATTGCTGTGCAGCTTTTCAAGGGGAAGTTTTTTCACTGCACCGATGAGTCCAAAGCCCTGGAGAAGGACTGCAGGGGTCAGTTCCTGGAGTACGGCAGTGATGGAGTGGCCATGACGCAGCCTCGCGAGTGGAAGAAGTATGATTTCCATTATGACAACGTCCTGTGGGCCTTTCTTACCCTGTTCACTGTCTCTACAGGAGAGGGCTGGCCAACAGTGCTGAAACATTCTGTAGATGCCACATATGAAGACCAGGGTCCCAGTCCAGGTTACCGCATGGAAACCTCTATCTTCTATGTGGTCTACTTCATCGTCTTCCCCTTCTTCTTTGTCAACATCTTTGTGGCTTTGATCATCATCACATTCCAGGAGCAGGGAGATAAAGCCATGTCAGAGTGCAGCTTGGAGAAGAACGAGCGAGCTTGTATTGACTTTGCCATCAACGCCAAACCTCTGACCCGCTACATGCCGCAGGACAAGCAGTCTTACCAATACAAGATGTGGAAGTTTGTGGTGTCCACTCCATTTGAGTACTCCATCCTGAGCATGATTGCCGTCAACACAGTAGTCCTCATGATGAAGTTCCATGATGCTCCTAAACCGTATGAGGACATGTTGAAGTGGCTGAACATCATCTTCACGGCTCTCTTTACACTGGAGTGCATTCTCAAGGTCATCGCCTTTGGCCCTCTGAACTACCTGAAGGAGGCATGGAACATTTTTGACTTTGTTACTGTGCTGGGGAGCATCACAGACATTCTGGTTACTGAGATCAAGGATAAGAAGATTAATCTGAGTTTCCTGAGACTCTTCCGGGCTGCTCGTCTCATTAAACTCCTCCGACAGGGCTACACCATTCGCATCCTGCTCTGGACCTTCGTTCAGTCGTTTAAGGCTCTGCCGTATGTGTGTCTCCTCATTGCAATGCTCTTCTTCATTTACGCCATCATCGGGATGCAGGTGTTTGGTAACATAAAGTTGAATGAAGAGTCAGCCATCAATCATCACAATAACTTCCAAACCTTTTTTCAGGCCCTCATGTTGTTGTTCAGAAGTGCTACAGGGGAAGGTTGGCATGAGATCATGCTGGCTTGTCTGAGCGAAAGGCCATGTGACGACGAATCTGGCTACAGTGGAAAAGAGTGCGGCAGTGATTTCGCTTACTTCTACTTTGTCTCTTTCATCTTTCTTTGCTCCTTCCTGATGCTGAATCTGTTTGTTGCTGTCATCATGGATAACTTTGAGTACCTGACACGTGACGCTTCTATTCTCGGGCCTCATCACCTCGACGAGTTCATCCGGGTCTGGGCCGAGTACGACCCTGCCGCCTGCGGAAGGATACGCTATATGGATATGTACAATTTGTTGCGCGTAATCTCACCCCCCCTCGGCTTAGGAAAGAAGTGCCCTAATAGGGTGGCATACAAGCGGTTGGTGAGGATGAACATGCCCATAGCTGAAGACAACACTGTTCACTTTACCTCCACTTTAATGGCTCTCATCCGGACCGCCCTGGAGATTAAACTGGCATCAGGAGTTCTGGCCCAGCGCCTTTGTGATGCTCAGTTAAGGAAGGAAATAAATAAAATTTGGCCTAGCTTGTCTTCAAAAACAGTGGATTTGCTGGTGACACCTCATAAACATAATGAATTGACTGTAGGGAAGGTCTATGCTGCTCTGATGATTTTCGACTACTATAAGCAGAACCGAGCCAAGAGACTCCAACAGCAGCAGGCTGCACCAGGCACACAGAGTAAAGTCGGAGTTCTCTTCAGACCAATGCTTCCTCTCACACACTTGCATGATCAGGAGCCAATGCTGCCAAAAGCCCTACCTGCTTCTCAATTAGAGACCACACCACAGCCAGAGGCCACCTCCTTTCACCTGACCAATGGGGATGCAGTACAAAGCCAGAGCAGTGGCATGAAAAAGTATCCCTCAGGAGGCATACCTCAGGAAGCCGCACAGGAACCGAACAGAAGGCCTGTCCAACGTGGCCAATCAGAAGACATGCCAAACACATACAGATCTCAGGAATTAGTTGAGATGAGTGACATGGAGAATGACTCGGATGTGGGTGGGTATCCTGTGCTGGAGGGTCACGGCAGAGCTGCCTCCATGCCAAGACTCAACGCTGGCTTTCAGCGGAGCCACTTACGCCACACCGCCGGAACGTATCTAGCACCTATCGCAGATGTGAGTCCCATGCGGCGGTCTACATCCTCATTGACTCCTCAGAGAGGGGTGCGAGAGGTCAGTCTGAGCGAATATGACCTGGAAAGGCCCCAGATGGCCTCAGACAAGAAGCACAAATCACTGGATCGAGCCATCAGCGAGGAGCAGCCACCGCCCACAGCAGATCCAAACACTGAGTCATTGCCTAGGGAACGAGCGCGGGAGCGTGATCGTGGCCGCTCACACGAGAGGAAGCACCATTCATCCTCAGCGGCGGAAAGACAGCAGCGATACTACTCGTGCGACCGCTACGGCAGCCATGAACAGGGCCACAGCGTGTCCGCTGGGCCCAGCCGGGCCACATCACCAGGAGAACCACATGACCCAAACAGGCTTAAACAGGGAATTAACACTGCTAAAGGAAGTTCAGTCGCTCATACCTCAGGCACCAGCACACCCTGCCGTGGGCGTAGACAGCTCCCTCAGACGCCCCTTACTCCTCGGCCGGCTGTTGCCTACAAGACTGCCAACTCCTCTCCGGTCCAGCTCAACACTGCCCAGTCTACAGGGCCCTGCCCCACTCGCCTTAGTCGTGGCCTGTCAGAGCACGATGCCCTACTTAGCGGTAACGCCCACCGCCAATCTCCCGTGCCTGTCACTCGTATCAGCTCTGACCCCAACTTAGGTCCCCTCCAGCAAGACTCGCACTTGTCTGAAGCAGATGACTTCCACGATGCCTTGAGCACGTACGGTGCGAGCCGTTCCCCCAGGACTGCACCCTCCGTCACCTACACAACATCAGGTGCAACCCCCACTTCCACGCTGCTCTCGCGCAGCCAGAGCGGAGTCCCCAATGGCTATCACTACTCCCTCGGAGTGAACTCGGCACCTGGTTCGAGCGGCCGAGCATCTGGAAGCTACCAGGAGACTGAGAGAGATGACTGGTGT

Function

NR:

description
voltage-gated calcium channel subunit Cav2.2 variant I

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_10921053_11064211.mRNA True 6696 mRNA 0.51 46 10921053 11064211

Neighbor

gene id symbol gene type direction distance location
CI01000006_10911878_10918372 NA coding upstream 2074 10911576 ~ 10918979 (+)
CI01000006_10901059_10906327 EHMT1, EHMT1B coding upstream 14486 10901059 ~ 10906567 (+)
CI01000006_10856614_10870840 ARRDC1B, ARRDC1 coding upstream 49771 10856289 ~ 10871282 (+)
CI01000006_10837154_10838610 NA coding upstream 81770 10836572 ~ 10839283 (+)
CI01000006_10828974_10834485 NA coding upstream 86513 10828839 ~ 10834540 (+)
CI01000006_11069210_11101466 NA coding downstream 4064 11068275 ~ 11101489 (+)
CI01000006_11122190_11137711 NA coding downstream 57979 11122190 ~ 11137756 (+)
CI01000006_11143743_11157316 MAN1B1A coding downstream 79532 11143743 ~ 11158587 (+)
CI01000006_11178091_11284993 DFNB31, DFNB31A, WHRN coding downstream 112925 11177136 ~ 11285031 (+)
CI01000006_11298514_11313005 NA coding downstream 234161 11298372 ~ 11313385 (+)
G47252 NA non-coding upstream 95120 10825660 ~ 10825933 (+)
G47175 NA non-coding upstream 116000 10801586 ~ 10805053 (+)
G47213 NA non-coding upstream 248461 10664966 ~ 10672592 (+)
G47220 NA non-coding upstream 305035 10615325 ~ 10616018 (+)
G47218 NA non-coding upstream 353754 10566654 ~ 10567299 (+)
G47194 NA non-coding downstream 40450 11104661 ~ 11185170 (+)
G47184 NA non-coding downstream 223275 11287486 ~ 11290495 (+)
G47164 NA non-coding downstream 250312 11314523 ~ 11321670 (+)
G47163 NA non-coding downstream 322992 11387203 ~ 11392950 (+)
G47298 NA non-coding downstream 350545 11414756 ~ 11415179 (+)
G47145 NA other upstream 409247 10485358 ~ 10511806 (+)
G46652 NA other upstream 761802 10156579 ~ 10159251 (+)
G45416 NA other upstream 2086356 8818814 ~ 8834697 (+)
G45355 NA other upstream 2708665 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2720908 8197881 ~ 8200145 (+)
G47159 NA other downstream 352018 11416229 ~ 11521703 (+)
G47318 NA other downstream 560056 11624267 ~ 11638252 (+)
G48094 NA other downstream 1213409 12277620 ~ 12279541 (+)
G48081 NA other downstream 1312795 12377006 ~ 12384827 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020200 LOC106585428 coding CM030127.1 CM030127.1 12929785 ~ 13017709 (-)