G145837


Basic Information

Item Value
gene id G145837
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31503507 ~ 31505497 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197322
CTTTAAGACGGTCTAGAAGAAGAGAAAGCGAAACTTCACTGCATTCGCTTTGTTGCTGTTCTTCAGAGCACCTGACCAGAATGGGCAAAATATACCAAGTTATCGTTCTTGGTCTCAAAGGGGAAAAGAAAACGATTGATGTTGCAAACTCTGAAACGGATTTCAACAACACCACTGTGGTGGCCttcaaagaaaaaatcacagagAAATTTCCTGAACTTAAAGGGCAGAATTTTAAACTGATGTACACTGATGAACAGCTACAGGACGATGAGACCTTCTCCAAGTACGAAATCCAGACTGGCTCCATTATCGTTCTCATTCTGCGCCTGCCTGGAGGATCTGCACTGTAAAATAATGGGATGAACACGGAATCTTCAGCTTTCTGgacttttaattaatattttcttgtctttttaagTTAATCAAACATGTATGAGTATTTGCccttaattaatgtattttggaTGATTACTTTACAAATGTACAGAAGTTCTTAAGTAGAATGTAGCCTATTTGCTTATAAATACAGTTTGCATATAGATGGTAACCAATACATTCATTTAATGTTTACTGTTGCTGGTCGGCTTATGTAAATGCACTTTAGAAGTTACATTGTCTCCAGTTTTCCGTCTAGTACTCGTAGTCGATTTCCagacaacaaatcataaaatacatttctaaattAATCTATTGAAAGaaatctaaattaaaattaaattgcctacatcaaattccaaataatcaATGGGAAAATGCAGTACCagtctaaagtttttttttatttatttattttattttatgaatattctacattgtagactcatattaaagacatgaaaacaatttagCGACACATATGAAATTAAGTGTTTGgtctccacaatcccctgacctaaacccaactaagATTGGGGATTTGGGATAAGATGGAGCGcagtgtgaagaaaaagcatAAACTATTGTTTAACACTGGAATTCTGTCAAGACGCtgaaaaaactattccaggtgactctaccttattaAGACACTGCATGggaaaataccaagagtgtgcagatctttcctcaaagctaaatatgGCTGCTTAAAAGAATCTAATGTCTACAActttctagtttgtttaacacattttgtttagaacaaaattctgcatgtgtttcgATATAGTTGTAATgttttcaatattacatttacactgtaaaaacaagtgaatgagaagaggtgtgtccaagaATTAgacaggtactgtatatattattctTATTGTACTTACACACCTCAATTTGCTTAAATtatgtgtggaaaaaaaatatgttacgTCTAAAATTAACGGCCTAGAAAATGAAGCGAAAAAGCCTTGTCGGCTTTGCCGTATATGACCCAATATCGTCTTTTTACATGATGGGTATATGCAGAAATACTGTGCAGTTTTTTTAGAGTATAGTTTCCttgtaaaattatgtaaaattatGTACGAAATaggttaattattaaaatacacatatacactgtaaaaagtgaagcatggagctgttcattcaagctaataaatatgattgaacacatagtacaattattgactttattgtgaaactcaacctttttgaattttgatgtgtcaattttgattcagactaaattaattacaattctgaaggaaataaaccaaatgttttggttccactgaaatcatactcgaagaaaagagataaggatgtaatatttttaatttgaatcaaacatgaattgcgcatgcgcactgtggagcacgggagaagttgtagagaagtgcttcagagcactgagggagagagggagaaagtgcctgaacgcgctcgcgagagagagaatgagagagggagaaagtgcctgaacgcgctcgcgagatagcaac

Function

NR:

description
PREDICTED: amyloid beta A4 precursor protein-binding family B member 3-like isoform X2

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU197322 True 1898 lncRNA 0.35 2 31503507 31505497

Neighbor

gene id symbol gene type direction distance location
znf638 NA coding upstream 13002 31459269 ~ 31490505 (+)
LOC103039501 NA coding upstream 164726 31301201 ~ 31338781 (+)
LOC103040428 LOC108434604 coding upstream 211580 31283811 ~ 31291927 (+)
LOC103040122 LOC103040122,LOC108434605 coding upstream 221736 31275085 ~ 31281771 (+)
snx15 snx15,LOC102775858 coding upstream 233999 31259570 ~ 31269508 (+)
LOC103022147 NA coding downstream 679 31506176 ~ 31510676 (+)
oxa1l NA coding downstream 16524 31522021 ~ 31527907 (+)
ccnb1ip1 ccnb1ip1 coding downstream 58281 31563778 ~ 31566738 (+)
man2b2 man2b2 coding downstream 66744 31572241 ~ 31584973 (+)
acox3 acox3 coding downstream 91849 31597346 ~ 31619532 (+)
G145843 LOC103036756,LOC108434598 non-coding upstream 3001 31499125 ~ 31500506 (+)
G145829 NA non-coding upstream 94536 31406500 ~ 31408971 (+)
G145813 LOC103038355,LOC108434587,LOC108267728 non-coding upstream 135011 31364272 ~ 31368496 (+)
G145720 NA non-coding upstream 287252 31215435 ~ 31216255 (+)
G145690 NA non-coding upstream 397385 31104749 ~ 31106122 (+)
G145854 NA non-coding downstream 45036 31550533 ~ 31552109 (+)
G145859 ttc5,LOC107738047 non-coding downstream 61440 31566937 ~ 31567882 (+)
G145868 NA non-coding downstream 119225 31624722 ~ 31626962 (+)
LOC111194381 NA non-coding downstream 121543 31627040 ~ 31632925 (+)
G145875 NA non-coding downstream 143029 31648526 ~ 31649885 (+)
G145748 mus81 other upstream 149063 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 281173 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 373484 31063439 ~ 31130023 (+)
LOC103022860 LOC103022860 other upstream 588670 30911831 ~ 30914837 (+)
G145543 NA other upstream 831320 30668799 ~ 30672187 (+)
smim20 NA other downstream 211645 31717142 ~ 31719051 (+)
tbc1d19 tbc1d19,LOC107660707 other downstream 387029 31892526 ~ 31926550 (+)
trnae-uuc_22 NA other downstream 565817 32071314 ~ 32071563 (+)
G146104 NA other downstream 1106628 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 1374193 32879690 ~ 33104229 (+)

Expression


Co-expression Network