RNA id: TU197322


Basic Information

Item Value
RNA id TU197322
length 1898
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G145837
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31503507 ~ 31505497 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTAAGACGGTCTAGAAGAAGAGAAAGCGAAACTTCACTGCATTCGCTTTGTTGCTGTTCTTCAGAGCACCTGACCAGAATGGGCAAAATATACCAAGTTATCGTTCTTGGTCTCAAAGGGGAAAAGAAAACGATTGATGTTGCAAACTCTGAAACGGATTTCAACAACACCACTGTGGTGGCCttcaaagaaaaaatcacagagAAATTTCCTGAACTTAAAGGGCAGAATTTTAAACTGATGTACACTGATGAACAGCTACAGGACGATGAGACCTTCTCCAAGTACGAAATCCAGACTGGCTCCATTATCGTTCTCATTCTGCGCCTGCCTGGAGGATCTGCACTGTAAAATAATGGGATGAACACGGAATCTTCAGCTTTCTGgacttttaattaatattttcttgtctttttaagTTAATCAAACATGTATGAGTATTTGCccttaattaatgtattttggaTGATTACTTTACAAATGTACAGAAGTTCTTAAGTAGAATGTAGCCTATTTGCTTATAAATACAGTTTGCATATAGATGGTAACCAATACATTCATTTAATGTTTACTGTTGCTGGTCGGCTTATGTAAATGCACTTTAGAAGTTACATTGTCTCCAGTTTTCCGTCTAGTACTCGTAGTCGATTTCCagacaacaaatcataaaatacatttctaaattAATCTATTGAAAGaaatctaaattaaaattaaattgcctacatcaaattccaaataatcaATGGGAAAATGCAGTACCagtctaaagtttttttttatttatttattttattttatgaatattctacattgtagactcatattaaagacatgaaaacaatttagCGACACATATGAAATTAAGTGTTTGgtctccacaatcccctgacctaaacccaactaagATTGGGGATTTGGGATAAGATGGAGCGcagtgtgaagaaaaagcatAAACTATTGTTTAACACTGGAATTCTGTCAAGACGCtgaaaaaactattccaggtgactctaccttattaAGACACTGCATGggaaaataccaagagtgtgcagatctttcctcaaagctaaatatgGCTGCTTAAAAGAATCTAATGTCTACAActttctagtttgtttaacacattttgtttagaacaaaattctgcatgtgtttcgATATAGTTGTAATgttttcaatattacatttacactgtaaaaacaagtgaatgagaagaggtgtgtccaagaATTAgacaggtactgtatatattattctTATTGTACTTACACACCTCAATTTGCTTAAATtatgtgtggaaaaaaaatatgttacgTCTAAAATTAACGGCCTAGAAAATGAAGCGAAAAAGCCTTGTCGGCTTTGCCGTATATGACCCAATATCGTCTTTTTACATGATGGGTATATGCAGAAATACTGTGCAGTTTTTTTAGAGTATAGTTTCCttgtaaaattatgtaaaattatGTACGAAATaggttaattattaaaatacacatatacactgtaaaaagtgaagcatggagctgttcattcaagctaataaatatgattgaacacatagtacaattattgactttattgtgaaactcaacctttttgaattttgatgtgtcaattttgattcagactaaattaattacaattctgaaggaaataaaccaaatgttttggttccactgaaatcatactcgaagaaaagagataaggatgtaatatttttaatttgaatcaaacatgaattgcgcatgcgcactgtggagcacgggagaagttgtagagaagtgcttcagagcactgagggagagagggagaaagtgcctgaacgcgctcgcgagagagagaatgagagagggagaaagtgcctgaacgcgctcgcgagatagcaac

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197328 lncRNA upstream 3001 31499125 ~ 31500506 (+) True G145843
TU197308 lncRNA upstream 94536 31406500 ~ 31408971 (+) True G145829
TU197287 lncRNA upstream 135011 31364272 ~ 31368496 (+) True G145813
TU197165 lncRNA upstream 281173 31217393 ~ 31222334 (+) False G145711
TU197166 lncRNA upstream 283657 31217393 ~ 31219850 (+) False G145711
TU197345 lncRNA downstream 45036 31550533 ~ 31552109 (+) True G145854
TU197352 lncRNA downstream 61440 31566937 ~ 31567882 (+) True G145859
TU197365 lncRNA downstream 119225 31624722 ~ 31626962 (+) True G145868
TU197366 lncRNA downstream 119225 31624722 ~ 31626962 (+) False G145868
TU197367 lncRNA downstream 119225 31624722 ~ 31626962 (+) False G145868
XM_022678416.1 mRNA upstream 13002 31459269 ~ 31490505 (+) False znf638
XM_007248019.3 mRNA upstream 13002 31459270 ~ 31490505 (+) True znf638
XM_015605530.2 mRNA upstream 13002 31472794 ~ 31490505 (+) False znf638
XM_022678429.1 mRNA upstream 164726 31301201 ~ 31338781 (+) False LOC103039501
XM_022678430.1 mRNA downstream 679 31506176 ~ 31510676 (+) True LOC103022147
XM_022678424.1 mRNA downstream 16524 31522021 ~ 31527907 (+) True oxa1l
XM_022678433.1 mRNA downstream 58281 31563778 ~ 31566738 (+) False ccnb1ip1
XM_015605522.2 mRNA downstream 58297 31563794 ~ 31566738 (+) True ccnb1ip1
XM_022678417.1 mRNA downstream 66744 31572241 ~ 31584973 (+) True man2b2
TU197207 other upstream 149063 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 281173 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 373484 31073973 ~ 31130023 (+) False LOC103044823
TU197029 other upstream 588695 30911857 ~ 30914812 (+) False LOC103022860
TU196945 other upstream 831320 30668799 ~ 30672187 (+) True G145543
trnae-uuc_22 other downstream 565858 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197717 other downstream 1106628 32612125 ~ 32612562 (+) True G146104
TU198225 other downstream 3894326 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 4986015 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 5185196 36690693 ~ 36719287 (+) True acap1

Expression Profile