RNA id: TU197367


Basic Information

Item Value
RNA id TU197367
length 240
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G145868
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31624722 ~ 31626962 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacagagcctgttatagtacacacacacacacacccacacacagagcctgttatagtacacacacacaaacacacacacacacagagcctgttatagtacacacacacacacacacacacagagcctgttatagtacacacacacacacccacacacagagcctgttatagtacacacacacaaacacacacacacacagagcctgttatagtacacacacacgcacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197352 lncRNA upstream 56840 31566937 ~ 31567882 (+) True G145859
TU197345 lncRNA upstream 72613 31550533 ~ 31552109 (+) True G145854
TU197322 lncRNA upstream 119225 31503507 ~ 31505497 (+) True G145837
TU197328 lncRNA upstream 124216 31499125 ~ 31500506 (+) True G145843
TU197308 lncRNA upstream 215751 31406500 ~ 31408971 (+) True G145829
XR_002651051.1 lncRNA downstream 78 31627040 ~ 31632925 (+) False LOC111194381
TU197370 lncRNA downstream 2296 31629258 ~ 31630741 (+) True LOC111194381
TU197371 lncRNA downstream 2296 31629258 ~ 31630741 (+) False LOC111194381
XR_002651052.1 lncRNA downstream 3181 31630143 ~ 31632925 (+) False LOC111194381
TU197377 lncRNA downstream 21564 31648526 ~ 31649885 (+) True G145875
XM_007248011.3 mRNA upstream 5190 31597346 ~ 31619532 (+) False acox3
XM_007248012.3 mRNA upstream 5190 31597479 ~ 31619532 (+) True acox3
XM_022678419.1 mRNA upstream 5190 31599152 ~ 31619532 (+) False acox3
XM_007248015.3 mRNA upstream 39749 31573610 ~ 31584973 (+) False man2b2
XM_007248008.3 mRNA downstream 39837 31666799 ~ 31670129 (+) True LOC103032972
XM_007248006.3 mRNA downstream 57266 31684228 ~ 31707955 (+) True LOC103032447
XM_007248004.3 mRNA downstream 90180 31717142 ~ 31719051 (+) True smim20
XM_007248003.3 mRNA downstream 146542 31773504 ~ 31859657 (+) False rbpj
XM_007248002.3 mRNA downstream 190785 31817747 ~ 31859657 (+) True rbpj
TU197207 other upstream 270278 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 402388 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 494699 31073973 ~ 31130023 (+) False LOC103044823
TU197029 other upstream 709910 30911857 ~ 30914812 (+) False LOC103022860
TU196945 other upstream 952535 30668799 ~ 30672187 (+) True G145543
trnae-uuc_22 other downstream 444393 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197717 other downstream 985163 32612125 ~ 32612562 (+) True G146104
TU198225 other downstream 3772861 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 4864550 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 5063731 36690693 ~ 36719287 (+) True acap1

Expression Profile