RNA id: TU197371


Basic Information

Item Value
RNA id TU197371
length 587
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC111194381
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31627040 ~ 31632925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acatttatttattgatttattgccacatttattaatttatttatttctgtatttctgcatttgtatgATAGTTAGGTAGGCGGTCCTATCCTCGCTCTAAAGCAGGATTGGTTTTTGAGCTGCAAAAGTTTTGGTTCTACTGCTTGTCACTACCCGATCTGTACCCCCTGCCCGATTTGTTCCGCGCATGCGCACGCATGCGCATTGCAAACTGAGCAGGGGCACAGATCAGGTAGGCAATGCCAAGTTGTGGTTCCGCTCACACTGTCGCAAACAGCTTGTAAAACGCGGTTTCAAAATGAAGGACTTACGTTTTTACAGAGCTCTGAAAGAGTACATTTTAAGTGGAACATTTACTCCAccatgcaacaaaaaaatgcGCAAGGAAATGCGGCGTGTGTCTGAAAACTTCATAGCAAAAGGTAAGTTAAAATCATATCATATTTTAGAAAGGTTTGCGTTAGCTGAGGAAGCGAAGTGTCCCGTTATGTGAACTAGTTAGTATAGCTAGGTTAACTATGCTAGCTAATTTAGCTCggagtattttattatatcaataagtaattaaatatgaaacgtgttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197365 lncRNA upstream 2296 31624722 ~ 31626962 (+) True G145868
TU197366 lncRNA upstream 2296 31624722 ~ 31626962 (+) False G145868
TU197367 lncRNA upstream 2296 31624722 ~ 31626962 (+) False G145868
TU197352 lncRNA upstream 61376 31566937 ~ 31567882 (+) True G145859
TU197345 lncRNA upstream 77149 31550533 ~ 31552109 (+) True G145854
TU197377 lncRNA downstream 17785 31648526 ~ 31649885 (+) True G145875
TU197509 lncRNA downstream 86444 31717185 ~ 31719051 (+) False smim20
TU197514 lncRNA downstream 106055 31736796 ~ 31739792 (+) True G145966
TU197516 lncRNA downstream 106055 31736796 ~ 31739792 (+) False G145966
TU197517 lncRNA downstream 106055 31736796 ~ 31739792 (+) False G145966
XM_007248011.3 mRNA upstream 9726 31597346 ~ 31619532 (+) False acox3
XM_007248012.3 mRNA upstream 9726 31597479 ~ 31619532 (+) True acox3
XM_022678419.1 mRNA upstream 9726 31599152 ~ 31619532 (+) False acox3
XM_007248015.3 mRNA upstream 44285 31573610 ~ 31584973 (+) False man2b2
XM_007248008.3 mRNA downstream 36058 31666799 ~ 31670129 (+) True LOC103032972
XM_007248006.3 mRNA downstream 53487 31684228 ~ 31707955 (+) True LOC103032447
XM_007248004.3 mRNA downstream 86401 31717142 ~ 31719051 (+) True smim20
XM_007248003.3 mRNA downstream 142763 31773504 ~ 31859657 (+) False rbpj
XM_007248002.3 mRNA downstream 187006 31817747 ~ 31859657 (+) True rbpj
TU197207 other upstream 274814 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 406924 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 499235 31073973 ~ 31130023 (+) False LOC103044823
TU197029 other upstream 714446 30911857 ~ 30914812 (+) False LOC103022860
TU196945 other upstream 957071 30668799 ~ 30672187 (+) True G145543
trnae-uuc_22 other downstream 440614 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197717 other downstream 981384 32612125 ~ 32612562 (+) True G146104
TU198225 other downstream 3769082 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 4860771 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 5059952 36690693 ~ 36719287 (+) True acap1