G146284


Basic Information

Item Value
gene id G146284
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34180258 ~ 34212243 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197939
TATGTAACGGCCAGTATTTTAGTTAAgtgtacactgtccctttaagagaccCTCGCGCCAGGCGCGCGGGCACATGGGTATCTACGCTAATAATGTGAGAGGCAGAGAGTTGTTGTGCTGTACCACTAGACCCACTGGACCTAAGctcctttattttgtttattttatttttgtagtaaCGCCTAATAAGTGCTTTTGGTGTCTACTTAGTTCATGTATGAACTAATAAAGAGTGGAGTACCGCCAGAGTGAGTCAGGGTCTTTCATCTGATCCAGAGTGCTTCGTGTTTCACCCGCCCAAAAGCTCCCTATCCGGGCTGGAGCGTTACAAtgctttgaaagactggttcagacccacatcaaggccaccatcaacatcactgtggatccacaccagtacgcatacaggaagaaccgatccacagaggatgccatttcctccgtggtccacactgccctcacccacctggagcagaaggattcctacgtccgtatgctctttgtggacttcacatctgctttcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197939 True 526 lncRNA 0.48 3 34180258 34212243

Neighbor

gene id symbol gene type direction distance location
LOC103032728 lrch4,LOC108428567,LOC107661958 coding upstream 10013 34115141 ~ 34170245 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding upstream 118291 34028450 ~ 34061967 (+)
dthd1 NA coding upstream 154885 34012482 ~ 34025373 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding upstream 2177775 31934723 ~ 32002483 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 2320601 31773504 ~ 31859657 (+)
rwdd4 rwdd4 coding downstream 164479 34376722 ~ 34383744 (+)
LOC103032224 LOC107583291 coding downstream 173087 34385330 ~ 34423139 (+)
LOC103039377 pcxb,LOC108428573,LOC108267638,LOC108412801,LOC107661088,LOC107721657,LOC107583287 coding downstream 469055 34681298 ~ 35048688 (+)
LOC103029357 plcb3,LOC108428576,LOC108267602 coding downstream 984013 35196256 ~ 35273019 (+)
LOC103027680 paip2b,LOC103027680,LOC108428580,LOC108263850 coding downstream 1250468 35462711 ~ 35478752 (+)
G146265 NA non-coding upstream 114749 34029326 ~ 34065509 (+)
G146243 NA non-coding upstream 275969 33882808 ~ 33904289 (+)
G146241 arap2 non-coding upstream 321950 33851013 ~ 33858308 (+)
G146237 NA non-coding upstream 357057 33821431 ~ 33823201 (+)
G146231 NA non-coding upstream 446456 33733540 ~ 33733802 (+)
G146424 NA non-coding downstream 376724 34588967 ~ 34589166 (+)
G146441 NA non-coding downstream 541679 34753922 ~ 34754396 (+)
G146457 ppp1r14b,LOC108268202 non-coding downstream 882118 35094361 ~ 35226268 (+)
G146466 NA non-coding downstream 998142 35210385 ~ 35274100 (+)
G146475 slc8a4b,LOC108428577,LOC107569310,LOC107744276,LOC107721660,LOC107661969,LOC107583282,LOC108267603 non-coding downstream 1070477 35282720 ~ 35293044 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other upstream 102283 34067581 ~ 34077975 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 1076029 32879690 ~ 33104229 (+)
G146104 NA other upstream 1567696 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 2108695 32071314 ~ 32071563 (+)
tbc1d19 tbc1d19,LOC107660707 other upstream 2253708 31892526 ~ 31926550 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 1187535 35399778 ~ 35406330 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 2279269 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 2478450 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 2826692 37038935 ~ 37042227 (+)
G147496 NA other downstream 4402635 38614878 ~ 38615355 (+)

Expression


Co-expression Network