LOC103027680 (paip2b,LOC103027680,LOC108428580,LOC108263850)


Basic Information

Item Value
gene id LOC103027680
gene name paip2b,LOC103027680,LOC108428580,LOC108263850
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35462711 ~ 35478752 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242036.3
aatattgataacaacaatgttgacatacatttaaaaataaatatattcttaaataacGTTAATTTCCTGCACCTGTATTAGACGTCCCCATGACGTCCAAAAAAGTGACCTAGTCCGAcgttcaaatgtttaactgcatattgACGTCCAAGTGGGGTCATAGTTAGACGTCCAAATAGTGGACCTAGTTTGCACGTCGTGTAGACGTACAGAATTGGTCTTGGACCGACCGACGCAATATAGACATGATCTGCACGTCCACAAGACGTCTAATGTTTAGTGAGCCAGCAGATATGAGTGGGCCTGATGTAGCGAAGACGCCGGGAGGCGGGGCTCCAGGGAAAGAAGGCAAAGACTCGGTAACCAATGGCCATGCAGAAGGAGAGGCTAACCCTTTCGCAGAGTATATGTGGATGGAGAATGAAGAGGAGTACAACCGACAGGTGGAGGAGGAGTTATTGGAACAGGAGTTTCTGGAGCGCTGTTTCCAAGAAATGTTGGATGAGGAGGACCAGGATTGGTTCATTCCAGCAAGGGACCTCCCTCCAGGGGTCGGGCagcttcagcagcagctcaatgGCCTGTCAGTCAACGACAGTATTGCTGAGGATATTGTGCGCAAGAGCAGCTTAAACCCCGAAGCCAAGGAATTCGTCCCGGGAGTGAAATACTAGGGATCAGCCTCACCCTCTGGAGTTGCCCTTTCACAAGCACATACACAAACCCACACATACAGAGACTTTTTTGGCTGTAATTACGACAGTCATGTTCACACACT
>XM_007242037.3
TATTTAGCTAAGAGCCGCTAGCCCCCTCAGCTCACTGCGAGTGAAGGAATTAGCTACCTGTGGGCGCCTTGTGCTGGAGTTTAACCGTGCTCTTGGGTGGAATTTGAGGGGTGACCGGAGGGAACGAGATGCCAGAGCCAGCAGATATGAGTGGGCCTGATGTAGCGAAGACGCCGGGAGGCGGGGCTCCAGGGAAAGAAGGCAAAGACTCGGTAACCAATGGCCATGCAGAAGGAGAGGCTAACCCTTTCGCAGAGTATATGTGGATGGAGAATGAAGAGGAGTACAACCGACAGGTGGAGGAGGAGTTATTGGAACAGGAGTTTCTGGAGCGCTGTTTCCAAGAAATGTTGGATGAGGAGGACCAGGATTGGTTCATTCCAGCAAGGGACCTCCCTCCAGGGGTCGGGCagcttcagcagcagctcaatgGCCTGTCAGTCAACGACAGTATTGCTGAGGATATTGTGCGCAAGAGCAGCTTAAACCCCGAAGCCAAGGAATTCGTCCCGGGAGTGAAATACTAGGGATCAGCCTCACCCTCTGGAGTTGCCCTTTCACAAGCACATACACAAACCCACACATACAGAGACTTTTTTGGCTGTAATTACGACAGTCATGTTCACACACT

Function

symbol description
paip2b Predicted to enable translation repressor activity. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within negative regulation of translational initiation. Predicted to be active in cytoplasm. Orthologous to human PAIP2B (poly(A) binding protein interacting protein 2B).

NR:

description
polyadenylate-binding protein-interacting protein 2B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242036.3 True 778 mRNA 0.47 4 35462711 35478752
XM_007242037.3 False 631 mRNA 0.53 4 35463155 35478752

Neighbor

gene id symbol gene type direction distance location
LOC103029357 plcb3,LOC108428576,LOC108267602 coding upstream 189692 35196256 ~ 35273019 (+)
LOC103039377 pcxb,LOC108428573,LOC108267638,LOC108412801,LOC107661088,LOC107721657,LOC107583287 coding upstream 414023 34681298 ~ 35048688 (+)
LOC103032224 LOC107583291 coding upstream 1039572 34385330 ~ 34423139 (+)
rwdd4 rwdd4 coding upstream 1078967 34376722 ~ 34383744 (+)
LOC103039994 NA coding upstream 1270751 34189634 ~ 34191960 (+)
LOC103027364 dok1 coding downstream 14893 35493645 ~ 35517535 (+)
sema4f sema4f,LOC101074835 coding downstream 142392 35621144 ~ 35711214 (+)
col4a5 col4a5 coding downstream 388093 35866845 ~ 35926583 (+)
LOC103024410 LOC101154659,LOC107707922,LOC108412583,LOC105030858,LOC107684956 coding downstream 540692 36019444 ~ 36033264 (+)
cnpy4 cnpy4 coding downstream 860365 36339117 ~ 36342606 (+)
G146504 NA non-coding upstream 922 35461006 ~ 35461789 (+)
G146503 NA non-coding upstream 3251 35459047 ~ 35459460 (+)
G146499 NA non-coding upstream 26964 35435228 ~ 35435747 (+)
G146494 NA non-coding upstream 42725 35419326 ~ 35419986 (+)
G146492 hspa12b,LOC107583310,LOC107697252,LOC107721672,LOC107691462 non-coding upstream 53475 35408617 ~ 35409236 (+)
G146500 NA non-coding downstream 7173 35485925 ~ 35486607 (+)
G146619 NA non-coding downstream 78016 35556768 ~ 35562922 (+)
G146622 NA non-coding downstream 107911 35586663 ~ 35587557 (+)
G146626 t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425 non-coding downstream 242099 35720851 ~ 35727232 (+)
G146670 NA non-coding downstream 448095 35926847 ~ 35927359 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other upstream 56381 35399778 ~ 35406330 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other upstream 1384736 34067581 ~ 34077975 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 2358482 32879690 ~ 33104229 (+)
G146104 NA other upstream 2850149 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 3391148 32071314 ~ 32071563 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 1012760 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 1211941 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 1560183 37038935 ~ 37042227 (+)
G147496 NA other downstream 3136126 38614878 ~ 38615355 (+)
G147592 NA other downstream 3668847 39147599 ~ 39151200 (+)

Expression


Co-expression Network