G146626 (t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425)


Basic Information

Item Value
gene id G146626
gene name t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35720851 ~ 35727232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198407
aaaaaaaggcctcaCTAAGAATCAAACGGATCAGAGTGGACAGAACCTTATAAAATTGGTCCAATTAAAGACAGCAGCACTATTATGATAAAGCTCAGACCTGCTGAGCACGGGCACCATCAGTCCATCCTGCAAAATGTTAAACTAAATCCACGCTGCCAGCCAGAGTTCTCACACTGACgacactatacacacattccACAATGCATTTGGAAAACCGCTCCCTGGACAGACTGATTAAGGCAACACTGCAtaaaaaattagatttaaagtaaaatcaacagaaaataaaaacaacttgaTACAGTTgaaaacatttacaatatattttggGGGGAAATTGGTaccacaaaattaaaaactctcTTCAATGTTTAAGCAGTGTGGTGACTCTAGAGCAAGGGTGGGCAATGGAGACCAGAATCCAGCATTGTTTGCTGATTTCCCTGCTCAAACAGAAATAGACTGCACCCAAACAGTGAACCACACACTAATACTAGAAGGAAAATACTATATACCAATATTAATAGTGTGGGATTGGTGGGTcagtacacaaaatattaatatactaacCTGTTTTGTATTAATAGGCAGTGATAAGGCATTGCTATGCTAACAAATGTATGTCACTGCTCTCCAGCAAATTCTTCAGCCACCACTGCAgcacccacccccccccctccctccaaACCTAGGCTGCAGCAGAGGTAATCTACATTTTCTCGGCCACTATGACAAAGAAGGCTGTTCCAAAGTGAAGGTCGCTTTGTATACAACAGAGAAATGCAGCAGGCATTCAAACATTTAAGGATGCAACTGATGTATCTTTCATGGCCCTCAATTACCCACAGTTAATTGCCCACATGCcattaaaagagaaataaaaaatattacagaCTTGTGCAGGAATTTGGCCCTCCAAAAATGGATCTGCCCATCCCTGCTCTAGAGTCAAAGCTTTATATAAGCTAACATAAAAGCTTCTGCATAACAGAACTGCTGTCTATATGGTCAACAGAATTAAAACGGATTATGAACAATATAAAGTGCAGTAACAGCctttttagaattaataaagagataaaagtACACCATCCACACTGTCTGATGAAACAGGGGGTTAAACCTGTGCTGCTGCAGGGTGTACTATCGTCAGCATGTCTGTGGAATCAGTCTTTCACAGATATTTGGCATTCAGCTGCTAAGTCTTCCACAAAGTCAAGAAAAAGTTCTGACCACTGGAACTGTAGTAGTGGTAAAGTAACTTCACTGCTTTTATAGGCTCTTTATAATGTCTTCTTCATCCCTTTAGCATTAAAAAGTTCATCAAGTACACCAAACACGCAGAAATATCAGGAGAAAAGCAGTCTTTTGTTTTCAGTCTTCTCCTGCAATCTTCCTTCTCCTGATGAGTTCAGTCACAGCACCAAAGATTGTTCAGTCAGGTATGTCTATGCACAGTTTAGGAGGCGGGTCAAAATATCTCCCAGGACTCGGCATGATTTCCACTTCTTTGCAGAGAAACTTGGGGCCACTTTTCAAAGGTTCGGGTGCAACTGGTATCTCCTCGAAAACCTCAGAGTCATCATGCTGCAGGTTGTAGGAAATGTTGCCATACTCTCGAAGGAATGGGAAGAGCTCAAGTAGGAAGAGACAGAAGTCTTTACGGATGCCAAACCACCAGTGATTCCCGCCCTTTTGTCTGAAAGTGGTGGTCATGAGAGTGATCAATGAGACCCACAAAGGCACAAAAACAGACACATAACTCAATTTGTTAAGGCCATCCAGCCTATGCACCAGCAAGATCTCAAATGTGAGGAGTGGCACTACGATAGTCATCCAGCTAACAGCCATGGTGACATAATTGCGACGCTGCTCTGCAATGATGTCCATGGAGCGGAGGAAGAGCATAGACCAGACAATATAGTAGAGCACCACCAGGCACAGGAATGACATGAGGATCCACAGCGGCACACACACTACCAGCCAGGACCATTTGATGATATTGTCCAGCCGCAAGGCAATGAAAATGAACTGAAGAATATTGACAGAACACATAATCTCCAGCTCCAGCGACCGGTCATGGCGAAATCCCCACACACAAGCAGCCACTGACAGCGGGGAGACGAAAAAAAGGGGCATGAAGACGAGAAGCCAGACATGGCCAGATGAGGTCCTCTCAATTCTGTCACACACCAATACTTCAAACATCAGCAGGAGAATGTGGATGCCCACTGCTATCAGCATGGCTTTGAACTCCACACATGTCTCGCCCTCCgctCTGTAGCGTGGATTGTGAGCCCACACACCAGTACCAACAGATGCTCCGATGACAACCATGAGCTTCCACAGCCAGATGGGTGTGAAAACAGCCCAGCTGCTCCACTCGACAACTCCATCCAGCCTCAGCGCCAGCAGAACAGAGAACAGCAACAAGGAGGCGTAGATGATGAATTTGCTGACATTAAAATCCTGAAACAGTCCTCTCAGATTCAtgataaagaaataaaccacATCACTGCTCAACAAACATCCCCTCAACTCCTAAACACCACCAAACCCATCTACCTCCAgttagcctagcttagcctatcTGTGCGTAAAAGCTACATTACCACACAGAGTCTGCAACAGAGGAGACTACCTACTGCACAATCTCTTCCGTGTTTAATTAACCAAC

Function

symbol description
tmem185a Predicted to be integral component of membrane. Predicted to be active in dendrite.

NR:

description
transmembrane protein 185A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198407 True 2680 lncRNA 0.44 7 35720851 35727232

Neighbor

gene id symbol gene type direction distance location
sema4f sema4f,LOC101074835 coding upstream 9637 35621144 ~ 35711214 (+)
LOC103027364 dok1 coding upstream 203316 35493645 ~ 35517535 (+)
LOC103027680 paip2b,LOC103027680,LOC108428580,LOC108263850 coding upstream 242099 35462711 ~ 35478752 (+)
LOC103029357 plcb3,LOC108428576,LOC108267602 coding upstream 447832 35196256 ~ 35273019 (+)
LOC103039377 pcxb,LOC108428573,LOC108267638,LOC108412801,LOC107661088,LOC107721657,LOC107583287 coding upstream 672163 34681298 ~ 35048688 (+)
col4a5 col4a5 coding downstream 139613 35866845 ~ 35926583 (+)
LOC103024410 LOC101154659,LOC107707922,LOC108412583,LOC105030858,LOC107684956 coding downstream 292212 36019444 ~ 36033264 (+)
cnpy4 cnpy4 coding downstream 611885 36339117 ~ 36342606 (+)
LOC103046951 NA coding downstream 616978 36344210 ~ 36352421 (+)
LOC103046647 NA coding downstream 631231 36358463 ~ 36379597 (+)
G146622 NA non-coding upstream 133294 35586663 ~ 35587557 (+)
G146619 NA non-coding upstream 157929 35556768 ~ 35562922 (+)
G146500 NA non-coding upstream 234244 35485925 ~ 35486607 (+)
G146504 NA non-coding upstream 259062 35461006 ~ 35461789 (+)
G146503 NA non-coding upstream 261391 35459047 ~ 35459460 (+)
G146670 NA non-coding downstream 199615 35926847 ~ 35927359 (+)
G146673 NA non-coding downstream 213873 35941105 ~ 35942332 (+)
G146708 rasl11a,LOC108412587,LOC107596470,LOC107707904 non-coding downstream 284337 36011569 ~ 36013821 (+)
G146713 NA non-coding downstream 309776 36037008 ~ 36046759 (+)
G146721 nhsl2 non-coding downstream 384921 36112153 ~ 36116911 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other upstream 314521 35399778 ~ 35406330 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other upstream 1642876 34067581 ~ 34077975 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 2616622 32879690 ~ 33104229 (+)
G146104 NA other upstream 3108289 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 3649288 32071314 ~ 32071563 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 764280 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 963461 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 1311703 37038935 ~ 37042227 (+)
G147496 NA other downstream 2887646 38614878 ~ 38615355 (+)
G147592 NA other downstream 3420367 39147599 ~ 39151200 (+)

Expression


Co-expression Network