G146622


Basic Information

Item Value
gene id G146622
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35586663 ~ 35587557 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198403
GTTTTGCATTATTGGTATTTGAATAGGTCACTCAGTATTCTGCATGGCTTTCTTCCCCACAGCTGTGGAGGCCTGGCCTGTACCTCACCGCTCCACATCCGAGAAAGGCATTGAAGGACAGTAAATGCCAACAGGCATTGATCATATGATTGTGGACAAGAGCCAGTAGCACTTTTCAGGTTGTGTTTGTGTCAGTATTTAGAGGCAATGACTGTGGTTTGTAAAGGTCATGCACTGGAGCTGAGAAGCTCCCTGTTGTTCACTCAATAAGCATGTGCTGAGCACTAATGTCAGCAGACAGATGTTGTGCAGGATATGGGGCCGACATTCAGGTTTAAAAGCATTCatttcatttagtttattaaatgcTGCATAATACCTACGTAAATCTGTACTGCACCTGATTTAGACTTTGGACTTCTGTGTGGATTCGTTTTAGATGTTTGTCCAACTGCTGCTCAACTTCTGTGACCTGTGGGTTAAATTAATCTAGATTTGCTTCCATTATAATCCAGGATTACTATTTTAATCCAGCGCTCTGTCTTTTAGAGACTTTAGGGACAGTTGGCAGCGCAGTGTAATGTGCTGTAGATTTTGGTTTCTGCTCTACTTTCATGGGGTGTGTAGCATATTGGTGAGAAGtttcaatttaaatataatttgatgttttatccaatttctttttttaataagcatGTTTTTAATGTGCAGCAGAATAAACTTCCAAGAACAAAAGGCAGAGACCCTTCAGAATTTGTAATGGTTATTCTGTAAAGATGGAATGTAAACTCTGATAATTCCAAAAGTTGGAAAATACATACATGGTACATGGTGGaatcatattttaatttctacCAGATTTGTTATTATCatgtaatgctttttttattggaaT

Function

NR:

description
PREDICTED: dachshund homolog 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198403 True 895 lncRNA 0.38 1 35586663 35587557

Neighbor

gene id symbol gene type direction distance location
LOC103027364 dok1 coding upstream 69128 35493645 ~ 35517535 (+)
LOC103027680 paip2b,LOC103027680,LOC108428580,LOC108263850 coding upstream 107911 35462711 ~ 35478752 (+)
LOC103029357 plcb3,LOC108428576,LOC108267602 coding upstream 313644 35196256 ~ 35273019 (+)
LOC103039377 pcxb,LOC108428573,LOC108267638,LOC108412801,LOC107661088,LOC107721657,LOC107583287 coding upstream 537975 34681298 ~ 35048688 (+)
LOC103032224 LOC107583291 coding upstream 1163524 34385330 ~ 34423139 (+)
sema4f sema4f,LOC101074835 coding downstream 33587 35621144 ~ 35711214 (+)
col4a5 col4a5 coding downstream 279288 35866845 ~ 35926583 (+)
LOC103024410 LOC101154659,LOC107707922,LOC108412583,LOC105030858,LOC107684956 coding downstream 431887 36019444 ~ 36033264 (+)
cnpy4 cnpy4 coding downstream 751560 36339117 ~ 36342606 (+)
LOC103046951 NA coding downstream 756653 36344210 ~ 36352421 (+)
G146619 NA non-coding upstream 23741 35556768 ~ 35562922 (+)
G146500 NA non-coding upstream 100056 35485925 ~ 35486607 (+)
G146504 NA non-coding upstream 124874 35461006 ~ 35461789 (+)
G146503 NA non-coding upstream 127203 35459047 ~ 35459460 (+)
G146499 NA non-coding upstream 150916 35435228 ~ 35435747 (+)
G146626 t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425 non-coding downstream 133294 35720851 ~ 35727232 (+)
G146670 NA non-coding downstream 339290 35926847 ~ 35927359 (+)
G146673 NA non-coding downstream 353548 35941105 ~ 35942332 (+)
G146708 rasl11a,LOC108412587,LOC107596470,LOC107707904 non-coding downstream 424012 36011569 ~ 36013821 (+)
G146713 NA non-coding downstream 449451 36037008 ~ 36046759 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other upstream 180333 35399778 ~ 35406330 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other upstream 1508688 34067581 ~ 34077975 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 2482434 32879690 ~ 33104229 (+)
G146104 NA other upstream 2974101 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 3515100 32071314 ~ 32071563 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 903955 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 1103136 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 1451378 37038935 ~ 37042227 (+)
G147496 NA other downstream 3027321 38614878 ~ 38615355 (+)
G147592 NA other downstream 3560042 39147599 ~ 39151200 (+)

Expression


Co-expression Network