G147602


Basic Information

Item Value
gene id G147602
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39198947 ~ 39201785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199724
ATTTAAAAAGGGTTCAATGAAATAAATGTTTCTTTAGCCAGAAGACGTCTGGCCCACTCACCTCTGCAGAATTGCCTTAAATCAGCCACTCTGATGGGCTTTCAAGCATGAACTGCCAATTTAAGTTCACCATGATGGGAAATTGACTGTCACTCTGAAACTGAAtctattctctttttttctgttattcgTTTAGAAGTAGGCTGGGCATTCCTCTGTATGATTTTTGTTTGGTATAGCGGGTGTGTATATGACATTTCAACCTGAAATCAGGTACCTAAAACTGACAGGAAGGCCTGATCTCTGGCCACATATTGATGTTCACTGACTATTGGTTTCTTGATTCTTTAGATGAACCACTTTTGAGCTCacctaactttaatttgaaCTCAATCATTTGTTCCATTGCCAGTTTGTTACAGAATGTTTTGCCACTGAGTCAAGCTAAAGGGGGCGTGTCCACTGTCCAGGCAGGAATGTGACGTCAACACATACCCTCTATAGAGCGTAATTAGAAGAGTTAAATCACTAAGGATCCAAACAAAGCatccacacaccagtggtcaggaCCTTACTAAAGTGGTTGAAGACAAATGGAGGAGAGGTGAACCAGTGTCAGGGTCATGGGCACCTAGGGTTAATTAGTGCAATTTTTAGCAGGACTCATTTACAAAGACTTGAAAGAATGATTTGCTGCAAACATGCCAGATACAACAAGGCAACTTCAGAGGTTATGTGGATTCCATACAAAATATTAGCCAGATGGTGTTAATGTTCTGGCTGATTGGTTTATATACACCATATATGGCTTTGTGTCCCAAAAAGAATGACGAGGACTAAGGATAAGGGGTGTATACATAcctatacattttaatttactattttttttttaaagcttggcATTTGCAATCAACCAAAGAccaataaagtaaagtaatgacAGAATGATACTGTAGCTTATTCTACTGGTAATTCTCACTGTAAGTCATGCTAGCACTGTTGAGCTGAAGGGTCTGTTATGCCCTTGGTTGACAGTGACTTCCAGCTGTACTGAGCGGAGGCCAGTACAGTAGCATGGTGGTGCAGAAAGCCGGCTGTACTAGATTAGAGAGCAGGAGGTCGCATTGCTGAAACAGTCACAGGGATCACATACTGACAACAGATGGGCTGTCCCACTGCCTTTGATTCTCCCCCTCTCTGATCTTAGCTAGAAAACAAACAGTAAGCAAAGCCAACAGGTGTCTCTCACATGTATGCACTCTGGTGAAGTTGCTGGATTCAACTTAATACAGAATATCAATAACCTGCAAAAATTACCTAGTGGTTAGATACACTAGAAAAACCTAGGCTGTAGTCCTATGAAGACTCATCAGTAGTCTGCTGTCAGCCAAATGAGGATGGTCATGTGTGAATGTTCCAAAACGCAAAAGCCACAAAACCTgtgattttaaatgattttaacaccttttaaaatgaactttgctcttagcatggttagcaggtaatgctaatgctaatactccagtcttgagtctctggagaactaaactgaaagtcCTATATAACGCTGTAATTTAGCGGAGCGGCTTTACTGCTCTCTATAACCTGATTGGTAAAATTCAcacctgattataaggtgcactgacgatttttgggaaaattaaaggattttaagtgcaccttatagtgcaaaaaatacggtaataatCTAATCAAACACATACTCTGATTTCTTagagtaaataaagaaaataagtcaGAAATCTGATTAAGGAATCTGATAGAAAGTTAGATACTATATAGATTGTGtgctttttcatttctttacattttaataatatctctgctcttgaaactttatttttaatcatttgaatatatttttatggtgCTGTTGTTCCTTTTTCCCCTATGGCGTTGTGAGTTGCAAGTTACAAAAGACCACAAAGGAAACATAAATTGTGTTCATCAAATTGTGCTCACTCCGAACTTCGACTACATTTTTCAGCTGTATATAGCATAAAGGGCCCTTCAGTTTGGAACAGCCTTCTATGACACAGTGTCTGAGAAATGCAGCTCACTGCATTTCAACTGTAGCCTAAACTTTGAAACGCAGCTTCTGTGTTACCTTTCATAAAcaggagctttatttaaaacatcaaaGTGACATTCCCCCCGAAATAAATGTTCATAGCGCAGAATCATCACACTCCAACACTCTCTATCTACAGTAAACAACACAAGAAcatgaaaaagaacattaacaTTCACTTCAAAGACCAGCAATGCGTACCACAACTGCACTGCCCAGCCATGCTCCGGTGTTCAAAAGTCAGAGATCAGAGCTATGACCTCTAAGATCAAGAGCTCATGAATGGGTCACTTGGTGTGGCGTTGAAACTGGCTTTAGCAAAAATAGCCAGTGTACCGACAGTGGTGAATATGACGAAGATCCAGAGGAAGAGGCGATCGACCACCATGGCAACGTACTGCCAGTCTTCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199724 True 2505 lncRNA 0.40 2 39198947 39201785

Neighbor

gene id symbol gene type direction distance location
tifa NA coding upstream 173187 39022937 ~ 39025760 (+)
LOC103041464 LOC103041464,LOC108410411,LOC108268320,LOC107562848,LOC107691962,LOC107742295 coding upstream 288791 38865417 ~ 38910156 (+)
LOC103042891 NA coding upstream 337654 38848973 ~ 38861293 (+)
LOC103022744 LOC107104322 coding upstream 552769 38642535 ~ 38646178 (+)
LOC103044424 LOC108434855,LOC108267436,LOC107669001,LOC107742332,LOC107562838,LOC107588216,LOC107691958 coding upstream 865987 38324773 ~ 38332960 (+)
nlgn2 nlgn2,nlgn2a,LOC103033407,LOC107664280,LOC107564776,LOC107659731,LOC107750775,LOC107753966 coding downstream 326637 39528422 ~ 39776934 (+)
urgcp NA coding downstream 577747 39779532 ~ 39790417 (+)
LOC107197636 LOC107197636,LOC108434818 coding downstream 596239 39798024 ~ 39800954 (+)
LOC103027388 NA coding downstream 603113 39804898 ~ 39806811 (+)
LOC103027097 LOC108434835,LOC106608815 coding downstream 607759 39809544 ~ 39812279 (+)
G147582 NA non-coding upstream 65776 39081282 ~ 39133171 (+)
G147549 fxr2,LOC108434865,LOC108267464,LOC107753958,LOC107750766 non-coding upstream 152231 39041621 ~ 39046716 (+)
G147573 rbm4.3,LOC106577685,LOC101471146 non-coding upstream 181303 39014027 ~ 39017644 (+)
G147548 sf1,LOC107562691 non-coding upstream 201231 38963740 ~ 38997716 (+)
G147572 pygmb,LOC108434859,LOC107701539,LOC105903101,LOC107742296,LOC107562665 non-coding upstream 215746 38982826 ~ 38983201 (+)
G147610 chrnb1 non-coding downstream 26406 39228191 ~ 39244389 (+)
G147668 NA non-coding downstream 58151 39259936 ~ 39260651 (+)
G147669 NA non-coding downstream 61023 39262808 ~ 39264163 (+)
G147702 NA non-coding downstream 209759 39411544 ~ 39412192 (+)
G147711 NA non-coding downstream 288797 39490582 ~ 39491617 (+)
G147592 NA other upstream 47747 39147599 ~ 39151200 (+)
G147496 NA other upstream 583592 38614878 ~ 38615355 (+)
c16h4orf48 cunh4orf48 other upstream 2156720 37038935 ~ 37042227 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other upstream 2479660 36690693 ~ 36719287 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other upstream 2704490 36491512 ~ 36494457 (+)
c16h20orf27 cunh20orf27,c7h20orf27,si:ch211-74f19.2,LOC107755635,LOC107697474 other downstream 1465455 40667240 ~ 40694778 (+)
G148036 NA other downstream 1559613 40761398 ~ 40787138 (+)
LOC103041218 LOC108411459,LOC108267979 other downstream 1634539 40836324 ~ 40870513 (+)
LOC107197094 NA other downstream 1692759 40894544 ~ 40902605 (+)
LOC103036120 NA other downstream 1795293 40997078 ~ 41000503 (+)

Expression


Co-expression Network