LOC103027388


Basic Information

Item Value
gene id LOC103027388
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39804898 ~ 39806811 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250226.2
TTcatatctcctctctctctttctctctctctctcgctctttcatGTTCAGCAGTTTCTCATCCTCATTTCTGAGCAGTGCGCGTGAGCACAGGTAGGGGAGATGTTGTCTCTATTACTCCTCTATGTTCtgatcctcctctcctcctatTCCTCTCTCCTGGAGGCCAGTGTGGATGAATCTTTCAGGGAGTGCTCTCATTTCCTGTACCACCAGAAGCCCCCTCAGGGCGTACGGCAACCCGGGCTACACATGATCTGTCAGCGCTTTGAAGGTGTGCCACGCTACGCAACCCTGTATGACCCTGCCCGCCGTATACCCCTCTACTCAGCATATACCTTTAAAGGGTCCAACGGAGAGAAGATGGGCAACTACCCCTGGATGTATGAaccacagCTTTCCAGTGCATCTGAAACTGGAAACATGCAGCCCTTTCCTCAATCAGGAGTTGGTCAGCGTTTGGAGGAGGGTCAGGCTGTATTAGCTGACTACACTGATGCTTTTAACTATGAGCGAGGCCAGCTGAACCCAGACCAGCACCAGTCCATGGTCGGGGACAAAGCTGCCACCTACACACTGACCAACGTGGTGCCCATGACCAAAGAGTTCCTCCGGAAGCGCTGGGAGCCGTACCTGGAAACGGTCCGGCAGCGCCTCAACAACTACTGCCGTGGCAAGGCCTATGTGGTGACCGGAATCACCACTGCTGGACTCACTATGCGCAGAGCTAACATCAACCGAGTGACTGTTCCCAAACACATCTGGTCTGCTTACTGTTGCCCTGACTTTGACCCTGGTGTGCCGTACGATATTCGCTATAAGTTTCCTTCTTTTGCTGCATATGGCCTCAATGATGTTTTAGATAACGATATTAATGAAGTTTCATCAAAAAGCCTGGAGATGCTGGTGAAGAGAGAAATGCCAGTGGATCAAAACTTTCAGCTATTTTATGGTAACTGTATTCAAGAGGTATAATAATGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250226.2 True 983 mRNA 0.50 2 39804898 39806811

Neighbor

gene id symbol gene type direction distance location
LOC107197636 LOC107197636,LOC108434818 coding upstream 3944 39798024 ~ 39800954 (+)
urgcp NA coding upstream 14481 39779532 ~ 39790417 (+)
nlgn2 nlgn2,nlgn2a,LOC103033407,LOC107664280,LOC107564776,LOC107659731,LOC107750775,LOC107753966 coding upstream 27964 39528422 ~ 39776934 (+)
tifa NA coding upstream 779138 39022937 ~ 39025760 (+)
LOC103041464 LOC103041464,LOC108410411,LOC108268320,LOC107562848,LOC107691962,LOC107742295 coding upstream 894742 38865417 ~ 38910156 (+)
LOC103027097 LOC108434835,LOC106608815 coding downstream 2733 39809544 ~ 39812279 (+)
LOC103032665 LOC103032665,LOC108434836,LOC106608812,LOC107595334,LOC107753995,LOC107659717,LOC107750788 coding downstream 5721 39812532 ~ 39815068 (+)
epo epo coding downstream 28359 39835170 ~ 39844320 (+)
gigyf1 gigyf1 coding downstream 43148 39849959 ~ 39888152 (+)
wrap53 wrap53 coding downstream 90470 39897281 ~ 39913353 (+)
G147771 NA non-coding upstream 69668 39734891 ~ 39735230 (+)
G147747 NA non-coding upstream 172146 39632499 ~ 39632752 (+)
G147711 NA non-coding upstream 313281 39490582 ~ 39491617 (+)
G147702 NA non-coding upstream 392706 39411544 ~ 39412192 (+)
G147669 NA non-coding upstream 540735 39262808 ~ 39264163 (+)
LOC107197641 NA non-coding downstream 81399 39888210 ~ 39896073 (+)
G147844 NA non-coding downstream 169058 39975869 ~ 39998122 (+)
G147831 NA non-coding downstream 184155 39990966 ~ 40050330 (+)
G147846 NA non-coding downstream 190342 39997153 ~ 40092387 (+)
LOC111194400 NA non-coding downstream 663486 40470297 ~ 40506590 (+)
G147592 NA other upstream 653698 39147599 ~ 39151200 (+)
G147496 NA other upstream 1189543 38614878 ~ 38615355 (+)
c16h4orf48 cunh4orf48 other upstream 2762671 37038935 ~ 37042227 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other upstream 3085611 36690693 ~ 36719287 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other upstream 3310441 36491512 ~ 36494457 (+)
c16h20orf27 cunh20orf27,c7h20orf27,si:ch211-74f19.2,LOC107755635,LOC107697474 other downstream 860429 40667240 ~ 40694778 (+)
G148036 NA other downstream 954587 40761398 ~ 40787138 (+)
LOC103041218 LOC108411459,LOC108267979 other downstream 1029513 40836324 ~ 40870513 (+)
LOC107197094 NA other downstream 1087733 40894544 ~ 40902605 (+)
LOC103036120 NA other downstream 1190267 40997078 ~ 41000503 (+)

Expression


Co-expression Network