urgcp


Basic Information

Item Value
gene id urgcp
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39779532 ~ 39790417 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678553.1
GTAAATGTCTGGAATAGACCAATCTTCTGCAGTAACAGGCTATAAtaattcacattaaaaaaatctaaagataAAATAACAGCTATGAAATGTATATTACACTGAATGGTTCAGTCCACCTTCAGCCTATTTAAGCAGCAAGATCTAAAAACGATACAGAGATGCTTCCTGAAGATCAGCTGGAACAGGAGTTACTCTTCATGAAAAATGTCAATCTGACTCTCAGATAAATACCTCAATACTTTCACCATGGATTCAGCAGCTGATACAGATGAAGATGAATTTGAAGATGCCAGGAGTGATCTTGAAGAGACGGTACAGTCCAGTTCTTCAAGAACTTGCTTCAATCAGACAAGGAAGAATGAAGACCCTGTCACACCAATAgAAACCATCCTTCGCAGTGTTCTTCAAACCTTAGGACTAGAGCAACATTACCATGAAAAGCTTCCATTAAGCACAGCGTTACAGATTGACAAAAGGACGGTTACAGATGATCCAGTCCAGTCCCTGTCAGCATTATCATGGAGCTTCCTGAAGAAACTGATGATGGTAAATGTGACTGCCAGAAACATAACCTGTTCTGTTTTAGAAAAGCCAGCTTCAGATAGCTCAGATTGGGAAGACGATCTGGATGATGATCAGGCAAATACAGGTGAGCAGATTTCTTTGGTGAACCCTTTAGACCTTGTGACCGCTCTTTTCCTGTGTGCAGATAGTTTTCTTCAGCAAGAGATGGTTTCTAAAATGTCTGTTTGCCAGTTCTCTGTACCTTTACTCCTACCAAACTGTGAAACTAATCAGGTCACCTTCATGCTCTGGGCAATGAGAGATATAGTAAAGAAATACAAACCACACTCACTTATAGATCCAAATGGATTTGTTGAAGAGAGGATTATTCTCTCTGACTTACCACTGGTGTCATTTGTACGACTTGGTGACTGTAGCACCTCTAAATCTCAAACTCTGAACAAGTTGCTTAGCAACCCCCAGCAGTACCAAGATATATTTCTACACAAAGACATGGATTGTGGTGACAttccaagaaaaatatcaaatgGCTTGGTGGAGATCAGCTGGTATCTTCCATCCGGTAACAAAAATATCGACATTTTCCCAGAACCTGTGGCCATTGCTAACTTGAGAGGTGATATCAACAAGTTTAAATCTCAGTACTCCTTCCTGTGTGAGACATcaaatgctgtttttgtgttcTTTGAAAAGCTTGACAAATGTGATCTTCTGACAAATAATCCAGAAAAGTTGCAGCTGTTTTTGGTTGGAGATTCTGAAACCaaggaaataaaaacaaaagctcAACAACTAAACCTGAAAAGAAACAATTTCATGTTCAGGGCAAAACAGAATGAAGACAGCTTTATCAAAACACTGCGAGCAAATATGAATACAGTGATTAGGAACTGTGAGAATACTAAGTCACTGGAGAAGATGACTAAAGTGGCACCTGAACTGGGCATCTTAGTTGACGAAGACACTGCAGATTGTAAGCGTGCAAAGGACCTTGCAGAAAAAATCACTTCAGAAATACAAGACATACCACAGTTCAAGGAAACACAACTTCCTCTTCAAGGGAAATTCTGGAAAGAACTAGCAAAGCTGGAGAAAGAAGAGTGCCGTCTTCAGTATGCAGGAGACCAGGGcattgaaaaatataaatgtgaGCTTGCTGCTAAGAAGATGGAGCTCAGGAAGCAGCAATGCAGTTTCAAAACTTCAACAGCAGTAACACTTTTCATACAGGCACTATCAAGACCTTGTCTGGAAAGAGCCTATTTTTTCAAATGGATGAGGATGAACCTGGACAGTCTGAGCACTAACAATGTTTCAATGCTTAAAGAGCAATATAAGAAATGCCAAGAGTCTTCAGGAAATAAGGAGGAGATTTCAAAACTGGACAAAAAGATTTCATGTTGTTCTCTAGGAATTGAGCATTTTTTTAGAGAACTTGGTCAGCTGTATGAATCTCAGGTTTCTTTATCAGACAATGATAAAGCTGAAAACCAGTTATCACATCTTCCGAAGCTTTGTGCAGAACTTCTGCTTGAAGGATTCCCTTTGGAACTGTTGGATGGAGATGCATCAAATATACCCATTAGGTGGATTAATGCTGTGCTGACAgagttaaatgttttgttgcaacCCAACAACAGAATCAGGACAGTTACAGTTTTAGGAGTCCAGAGCACAGGAAAGTCCACACTACTGAATACCATGTTTGGAGTTCAGTTTGCAATCAGCAGTGAAAGATGTACAAGAGGAGCATTTATGCTACTGCTGAAGGTCTCAGATGAAATCAAAGAAGAAGTCAACTGTGATTACTTAGTAATTATTGACACTGAGGGGCTAAAATCTGCTGAATTAGCACAGCTGGACAATAGCTATGAGCATGACAATGAGTTAGCTACCTTTGTTGTTGGTTTAAGTGATGTAACAATAATCAACATTGCCATGGAGAACTCTACTGACATGAAGGACATTTTGCAGATTGTAGTGCATGCCTTTATCAGGATGAAGGAAGTGGGTAAGAAacacaagtgtttttttgtgcacCAGAATATAAGTGATGTATCAGCACATGCCAAGAATATCAGAGACCGAACACTTCTGTTAGATCAGCTAAATGAAATGACTGAATTAGCAGCTAAAATGGAGGACAATGACCAGATTACAAAATTCACTGATGTTATGGAATATAATGTAGAGACTTCTAACTGGTACATTCCTGGACTCTGGCATGGAAACCCACCAATGGCATCAGTCAATGCAGGGTACAGTGAAGCTGTCTCTGAGCTCAAAAAGACAATAGTAAATGGACTTGGGAAATGCAAGGGATCTCAAAATACCATTTTGGATTTTATTGAGTGGACAAGACGTTTATGGAGTTCTGTGAAGTTTGAAAATTTCATCTTCAGCTTCAGGAACAGTTTGGTGGCAGATGCATACAGGAAAATATGTGTGGAATTCAACAAGTGGGCCTGGTCTTTCAGAAAGCACATGCACACCTGGACATTAAAAGCTGAGGGGAATATTTCCAATTTTGGGAAATTCTCTGAAAAGACTGCTGTGTCAGAGTTGAACCAGCTTGTTAACCAACTGAAAGGTAATGCAGCTTCAGAGCTTTCCAAAGGGGAAAGTACCATTCTGGACAATATCACCAGGTATTACAAACAAACAGATGGCTACATAGATCTTGTGGAAATATACAAAGAAGACTTCATCAACAGTGGAAAATCTTTGAGACGAGAGTTGGAGAATGCAGTTAGCAACAAGTTAGAAGCGGCTTCAACCATTTATCGAGCAATGTCGAAACTACAAGACATCAAAAAGAAGCAGAGAGTTACAATGGAACAGAAAGTGCTGGCATTGCTTGAAGAATGCAGAAAGAGCAAATCCCAAAAAACAGATGAAGACCTTAATCAAGACTTTGATAAGATGTGGAATGAAACTATTGAGGAACTGTCATTTCAGCCACATCCTAAACAAAATATCATggactgtgtttttaaacaacttATGATCAACCTGCAACACAAGGGAAGCTCAGTCACAAAGGAACTTGCTAAAACTAATCTGGAGGACTATGGAAAAGATCCATTTACTTTTGAAGTAGGATTTCTGCAAAAATGGTTTATGAAGCAAACAGTGCTTGAATTTCAAACATTGTCTGAAAACATCATTACAAAATCAGAGCAGTTTATTGAAGAACAAATTGCAACTAAAACTGATTATGATGACACATACATGAGGGAGATATTGCAGATAGTGGATGATGAATTAAACTCCTTCAAAAAAACTAAAGACTGTGATCAAATTGAAGTCCCATTGAAGAAACACATCTGTGGCTTTGCAGGCAGGAAATTTCAGGCCATGCATGATAGTTTCATTCAGGAGAATGACCCCCGCAAATGTCTGGACCAATCCAGAGATATGTACTGCAGAGACTTCAAGGATTTATTCCATGAACGAGATCAGTGTCAGAAAAAGGCAAAAGAATTTACAGATCGTTGTCTCATGCCTGCAGTTAAAGTGTACCTTTCCAAAGCCATCGGTCTTGAAATTGTTGAAAATATGGTCAATGGGAAAAATACATCTAATTTCCGCACACGCACGCTTTTTcaccagtttattttaaaagaactgCTGGATAAATTTAAGTTTGACAATTATTACAAGTATATGAAATCATATAAATCCTTAATGGAGGACAAGATTTTCTGTGAGATTTTAAAATGCATGCATGTTGAAAACAAACTTGCTGAAATAGAAGGGCAGTTGTTTGTGAGGATTACCAATTACATAACCACGTCTATCTCCAAATGTGTCAAACAACTGGACAGACAGAAATCCAGCAATATTAAGGAATTTGTTTTTGCTGTCTGCAAAGACCTGGAAGACACCTTGGTCATTCCTACGGATTCAGTGGAAGAGCTTATGAGTCTGAACAATGCAGATGTTGAACAGTTTGCTGAATGGCTTACAAAATCAGTggaagaaatgaaaatgaaattgcAACAGAAAAGTCaaaaacaagatttatttaCGAAAATAGAAAATCTTCAGTTCAATCCTGTAAATGAGCTGATGCAGCTATTGACCGGCTGTGGAGAACAGTGTCCATTCTGTGGTGTTCCGTGTGAAGCAACTGGTACAGAACACACAGAACACTTTGCTACCATTCACAGACCCCGAGGATTAAATGCATTTCACTCAGTTTCTTCTGAGGAACTTGTGACTGACATATGCACTTCTGCTGTGTTTAGTGAAAAGAGGTTTAAATGTAAGGACACAAACAACAAATTCCATCTCTACAGAAACTATCGTGAGATTTATCCTAACTGGCAAATCCCTCCAGATACCATCGAGGCATCCAACTACTGGAAATATGTGATGGCCCAATTTAATGAAGAATTTGCTGGTTTCTATGAGGCAAAACCTGCTGATATTCCTCCTGCCTGGAAACAAATCACAAAGGAACAGGCAGAAAGTAGTCTGAAGGAATGTTTTTGAGGAACATACTGCCTGCAAACACATAAGCGTAGTTCATGGCAGATCCTACAGCAACCATGCTGatactggttttaaaatgaaacaactCTAACATATGATTCTCTGCTGAGAGAAATCATCAGGATTCACAACAAACCCAAATTCTGTCACATTGTAAACCCATGCTACTATATTTATGCCTGTTTCACAGCTCATTTAAACACCTggctttaaacatttttagaaaaagcaaaaatcaCACTGTCCATGAGGaccaaaatgagaaaaaaatagacatgAAATACAGaaatcttaaaatgtaaaatctattACATTATTGCTATCAACACAGTTAAAGAATGCTGTATACCACATGTGCTGTATCTGATTTGTGTAATAAATGTAGTGGTTTTGTGTAATACAGTatcttataatatataatccAGAAGAAGTAGAATAATGAtggtgattacattttttgttggcACGTGACCAGCTTATGTGGAAATATTGCAACAAAATGGTCTCTGAACAAATATTACTCTATATGTTATGCTAATCAAAACTCAttcaaaaaatacaatttaatatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678553.1 True 5596 mRNA 0.38 4 39779532 39790417

Neighbor

gene id symbol gene type direction distance location
nlgn2 nlgn2,nlgn2a,LOC103033407,LOC107664280,LOC107564776,LOC107659731,LOC107750775,LOC107753966 coding upstream 2598 39528422 ~ 39776934 (+)
tifa NA coding upstream 753772 39022937 ~ 39025760 (+)
LOC103041464 LOC103041464,LOC108410411,LOC108268320,LOC107562848,LOC107691962,LOC107742295 coding upstream 869376 38865417 ~ 38910156 (+)
LOC103042891 NA coding upstream 918239 38848973 ~ 38861293 (+)
LOC103022744 LOC107104322 coding upstream 1133354 38642535 ~ 38646178 (+)
LOC107197636 LOC107197636,LOC108434818 coding downstream 7607 39798024 ~ 39800954 (+)
LOC103027388 NA coding downstream 14481 39804898 ~ 39806811 (+)
LOC103027097 LOC108434835,LOC106608815 coding downstream 19127 39809544 ~ 39812279 (+)
LOC103032665 LOC103032665,LOC108434836,LOC106608812,LOC107595334,LOC107753995,LOC107659717,LOC107750788 coding downstream 22115 39812532 ~ 39815068 (+)
epo epo coding downstream 44753 39835170 ~ 39844320 (+)
G147771 NA non-coding upstream 44302 39734891 ~ 39735230 (+)
G147747 NA non-coding upstream 146780 39632499 ~ 39632752 (+)
G147711 NA non-coding upstream 287915 39490582 ~ 39491617 (+)
G147702 NA non-coding upstream 367340 39411544 ~ 39412192 (+)
G147669 NA non-coding upstream 515369 39262808 ~ 39264163 (+)
LOC107197641 NA non-coding downstream 97793 39888210 ~ 39896073 (+)
G147844 NA non-coding downstream 185452 39975869 ~ 39998122 (+)
G147831 NA non-coding downstream 200549 39990966 ~ 40050330 (+)
G147846 NA non-coding downstream 206736 39997153 ~ 40092387 (+)
LOC111194400 NA non-coding downstream 679880 40470297 ~ 40506590 (+)
G147592 NA other upstream 628332 39147599 ~ 39151200 (+)
G147496 NA other upstream 1164177 38614878 ~ 38615355 (+)
c16h4orf48 cunh4orf48 other upstream 2737305 37038935 ~ 37042227 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other upstream 3060245 36690693 ~ 36719287 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other upstream 3285075 36491512 ~ 36494457 (+)
c16h20orf27 cunh20orf27,c7h20orf27,si:ch211-74f19.2,LOC107755635,LOC107697474 other downstream 876823 40667240 ~ 40694778 (+)
G148036 NA other downstream 970981 40761398 ~ 40787138 (+)
LOC103041218 LOC108411459,LOC108267979 other downstream 1045907 40836324 ~ 40870513 (+)
LOC107197094 NA other downstream 1104127 40894544 ~ 40902605 (+)
LOC103036120 NA other downstream 1206661 40997078 ~ 41000503 (+)

Expression


Co-expression Network