G41498


Basic Information

Item Value
gene id G41498
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3703620 ~ 3721669 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47113
GTAAGTACATAAGTCAACAAATCATAACATTGTTCTAGTGCTTTTGGATAATTAAATCTAAAAATCTTACTTATTGTGCCTTTAAATGCATGGAAAGGTTTGCCTTAAGTGTTCCACAGTAGAGAGAAAGTCTTACAGGTTTGGAATGACATGAAAGTGAGTAAATGTTGACAGAATGTTCATTTTTGGTTGAACCATTTTATTTTATTTTTTTTTTTTACATTAAATGCACTTTTCTGTCTCTCTTACACTATTTTTAATAAGCCCATGCAGGTTTACAGTTATATAGGCAACAGTGTTATGAACAAAAAGAGGTAATTTAGAAACAGAGGTCCAAGATGTTTATTTAGCAAGAAAACCAGAGTTCTGCAATGGAATGCATAACCTTTCTTTTTTTTTTTTACTACATTACCTTATGGGCAAAGAGAGAAAAAAAGAACCAGACCATAAACTTAGATCTTAGAAGAAAAGAAACAACAACATATAAAGGTCATAAAAAACATAACAGTAGAATAAATTAACAACTGGGGCAGAAGATGCAATACTACCTCCATAATGTATGTGATTCTACCATTATACGTCATTTGTTTAAACCTTAACCATTTGTTTGTTTAACGGTCTATACAGTTACAAAAAAAAATCGATTTCATTCAAAGCGGCATTTCATGGCAGCATTTGCTGCACCAACATGGCAGACGCAGTCTAACTAGATGACAAGCATTACGCACCGTCCCAATTGTCACTGTGCGTGGACCACAACTACAGGACCATGGAAGAGAAGAGCATGCCATTGTTTTTGAGAAATTATTCTTTTTTAGAAAAAAAAAAAAAAAAAAAAAAAATCATAAAATGCAGGTGCTATGGATGTATACAAATATATCGAACAGCCTGCAGGAAGTATCAGCACACAGCTTAAATGTAATATTTTTCCCTAGACAGAAACGGTCCACTGACTAGGACACCAAGTGCAGCATCAAAATGTAAGACTGTATATTAAGGTGAAAACTATTCTACATCTTCAGTACAAACTCCACACTTATAGAGCTCAAACCAAACAATAAACCTCTCTACACCAGTCTAGAACAAATAGGTGGCAATTGCTTTGGGGTAGTAAAATTAGTGAGGAAATGGAAGTTGGAAGGAAGGTTAAAGACTTACCACGTTTCTCTCAAATAATACAAAAAGGGGCTAAAACAAGCAGACTAACTGAAATAATTGGTCCCCAATTAACCATCTCTGGATTATTCTACGCAGGTTTGTCTAATTTTCTTTTTTATCTTGCACAATAGTTATGCGGTCCCTAAAGAACAAGCCCTATACCAAAACGTAAACTGTACTGAGTGGCTCCACTTTAAATCCATCTACAAGCACTCGCTCAGACACACAGATCTACATTTACAAAAACAATCACACTATGACATGGAAGTTTGAGCCATTTTGTTATATAAAGCCCCTGATTATCCATGAATGGTTATTCACCATACAGTTCTAAGACCACTGAGCAGAGGTTGCATGAGAAACATGCAGTTAAAGGAGAACTAGCAAGTTAGAAAAAGAGGCAAGCTGGGAAGAAGAAAAAAAAAAAAGAAAAAGAAAAAAAAAAAACACAGACACATGCCAAACGTAAACAAAGCATGCATTGCTCTTGTCCATATAGTATGTCACAATCTTTAAAATATTGATACATGTGTTACACTGCTGTTATCACCATCATATATGCAAGATTTAAACTTTGTTGTGCATGTAAATATTTTCTTCCAAAGAAAACCAAATCATGTAGGAAAAAGATTACAGGAGATCATTAAAAACAAGCAGAGGACTGTTCAAACTAAGGGAAAGTAGAGGAGAGCAAAACTAAATGGAGAGGAGTAAGAGTTTGGGTTGTGAATGCTTGTTGAATGTTGACAGTGAGAGTGCTGCCCACTGTTTGGTCTGATGCGCTCCTTTTGGTTTCCAGTTTTACTTCGCTGTCATCATCTGGACGAACTCTGAAAAAATTGATAAGTAGAGAATAGATAAATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47113 True 2024 lncRNA 0.35 2 3703620 3721669

Neighbor

gene id symbol gene type direction distance location
CI01000006_03607868_03614573 LRFN4A coding upstream 88685 3607255 ~ 3614935 (+)
CI01000006_03548703_03554763 PPP1R14BA, PPP1R14B coding upstream 148857 3548703 ~ 3554763 (+)
CI01000006_03483581_03526564 SLC8A4A coding upstream 176418 3483581 ~ 3527202 (+)
CI01000006_03446979_03447865 NA coding upstream 255704 3446979 ~ 3447916 (+)
CI01000006_03441003_03442001 NA coding upstream 260665 3440656 ~ 3442955 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L coding downstream 12885 3734554 ~ 3736035 (+)
CI01000006_03744756_03759381 NA coding downstream 22655 3744324 ~ 3759825 (+)
CI01000006_03760594_03770397 NXF1 coding downstream 38606 3760275 ~ 3770797 (+)
CI01000006_03808166_03810807 NA coding downstream 86416 3808085 ~ 3810807 (+)
CI01000006_03837017_03839129 NA coding downstream 115348 3837017 ~ 3839251 (+)
G41672 NA non-coding upstream 59381 3642819 ~ 3644239 (+)
G41637 NA non-coding upstream 135645 3567598 ~ 3567975 (+)
G41635 NA non-coding upstream 143541 3559768 ~ 3560079 (+)
G41634 NA non-coding upstream 143958 3559438 ~ 3559662 (+)
G41632 NA non-coding upstream 155445 3547958 ~ 3548175 (+)
G41523 NA non-coding downstream 4197 3725866 ~ 3726499 (+)
G41548 NA non-coding downstream 18525 3740194 ~ 3742496 (+)
G41716 NA non-coding downstream 54936 3776605 ~ 3776903 (+)
G41729 NA non-coding downstream 109235 3830904 ~ 3831126 (+)
G41591 NA other upstream 864199 2836167 ~ 2839421 (+)
G41424 NA other upstream 1043050 2645662 ~ 2660570 (+)
G41170 NA other upstream 2007799 1692065 ~ 1695821 (+)
G40768 NA other upstream 3210594 488407 ~ 493026 (+)
G40767 NA other upstream 3220285 360009 ~ 484185 (+)
G41996 NA other downstream 1395537 5117206 ~ 5124149 (+)
G43896 NA other downstream 2048420 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2386815 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2400366 6122035 ~ 6122751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G144975 NA non-coding NC_056719.1 CM032088.1 8840227 ~ 8842706 (-)