G90545


Basic Information

Item Value
gene id G90545
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12873021 ~ 12899679 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU121822
ataatagcagtacgtgttcatgctgctgctgctgctgttgtgtaTGTCCAGCTGAGCTGGTACACCGGAGCTCAGTTCATCTCCTGTGTGCCTCCCCTTCCCACCTGGACTGAAATCTGCAGCCCTGCGAATATAATTTAGAGAAGCCTGTGCTGTTGCATTGCAGTTGCATGAACTGAATTTACCAGGAGGCTGATTTGCATCCTGATGGACACACGTCGATGCATTCTTCATGTTCTAGCAGCTGTCCCTCATGTGGTTAGCTTGTGTCTGGTggaatatatatgtgtgtgtgtatgtgcgtgcgtgtgtgtttttggaGCTGGAGAATGCAGTCAGATATATTTTTCTCCGTCACTGTGATATGCATCTCTTACTGCTCCCCCTGCCTGCCTTTGCACATACCCGCTCCTGAACAAGGCCATATTCAAAGGACTACATATTTTGTGTAACAAATAGTGTGTActattaagtttattttttaacagagtAAGTCTAGATGTACATGTATATAGATGTATTCGTATAATAATAAGTCTATAAATTAAGGAAGAGAAGCCTATTTCTGATGGAATGCACCAAAGCATTGTCATTCAGCAGGttgagttttatttgtttaagccACAGGATATTTGAGTCTGCTTTTGTCTATCTGTTTGCCTTCTGTGTCGTTTGCTCGATTTCTGAGATTTTTATTAGCTCTgcgttttcttttctttttaacaattttttgatatttttagaaaaatgtgtacAGTTGCAGTGTTTTTCTCTTCACTGCTATTCCTGTGTTACTAATCTCACTTATATTGGTTACTCGTTTGTTGTCATGTGAAATTGAAGCATAACATTGCTGTTGCGCAAAAAACTTGTATCTTCATTGGTTTTCACtttggctatgttcacatttccagccttttttcaggtttatatatttataaacttaAAGTTTACTTACAGAAAAGACAGTGCAAGCATGATCTGTTGCATGTTTAATGCTGCATAATGCGAACAAACATGAAGAAGGGGAGTCAGATTATGGCAACACTGTCAGCGCAGCTAAACAACAGAGGTgatgtatataaatacaaatgtaaTTGCATAACTGTGTGCACGTGTTCCGCTTCAGGAatagatttgttcacattacagacagatagatagagattaCTCATCAcacatttatgaatgtgaactgaCAAGATCCAAATCCAAActgagcaaaaataaataaaatctgactttattaatgaggcttgtaatgtgaacatagccataTTGTGGCAGTTAAATCACAGTCACAGTTCTTAACAtagttttaaaatttaaaatgaatggaccaatagaaattctccaacaTGTCTTACAATcaaatctttttacactgacttccattaaaagccAAAAAGGCTTTTTCCTTCTTCTGGTAAAAGCTTATCATCCGTTTGGAAAGGCGAgttttttgtgtgacagcaacAATTATCGTGTCTGAAAGTACTGCCAGAATGTCCACAGCAGGAACTAATTTTATCTTACTGTAATGATGATAATTATGGACAAATTGTACCGTTTGCCCACAGATGTCCAGCCTGTGCAATGGCGGTGAAACCTTAAAGGCCAGCGCAGGTCCCTTTTTACAAATGaactctgtttctctcccttTCCCTGTTAAACTGTTTATCTAGCACTTTTATACATTTCAAATGCTACACAATGCAGTGTGCCACTAgcatgaccaaaaaaaaagaatcaataaaaacaatatatgcaTGCAGCTGTTGCTTGCAGAATGCTGCTGGTTGAGTTTTTAATAACATTCTGCAATTGCAGTTGGGACCAACTGGGAACACACCCTGTTGTCAAGTACATTTAGAAATGTGTAAAGGTGCTAGATCACAGTCTGATGTCTGGTAATGCTTCAGAACTTTGCAAACAAAATCCTTGTATTTTTTGTCTGGCCCTATTACATACTTATGCAGATTTTTCTGAGCTTTTTGTAAGTGCTTTGTGTAATTTTAGAGCTATGGAGCAAAAATGTACTTTGCATAAACGTATGGGAAGAAAAAGGACCAGGGAAGGCTAAACTTTGAGAGTAAGAGATGAAAAAAATTGGTGCAGATTTGAGTGTTAGTTTTAAAGGTTAAGATCAACCCAGACTGGAAACACTTAAGGCTcatttataattgttttatgtataaaaatgattGACAGTTTTAGACACTAACCCTTGAACACAAAAAGAAGACAAACACGAGTTGTCTCCTAGGGTTGCAGGGGTCTACCATAGTTATCATACcatgtatatttgtttattactgGAATTGGTGAAAAGAAAGTCAAGCAAACAGAGAATTTCATTTGTGCATATGCATCTTCAGCATATGCCCAcctcagcattagcattgcggCTAAATCTCTCCAGTACTGCTGAGGCCAGCTGCTGTATTTGTTAGCATTGTTGCTTTCAGTAGTTTagcccagctgttagcattgcagctaacctaTTATTCTAGGCTTCATAATGCAGGTTCAGAATAACCTATAATACGTAATATACACATAACTGTAAGACTTACTCTTACTAACCAGCTCTTAGCCTGTCAACAACTGTCAACAAGAAATCCACTATAGAAAACGTATAAATTCTAGAAATTATATCCCATTGCCGTTGCCCAGtgttttatttacagatttattatATCAGACTGTTTACAACAGTTATGATACCATGAAATTCTCATACTGTTGCAACCCTACATAATCTGTATTCACATTTGTATTTAACATTAAGTAAAAATGAGCCTTTAGCCAGTATAACCATACTTCCACAGTTCTAATGCTGTTTCCAGATTTTGTTGATATTCTAGCAGCTGCACTTTGAAAAAGCTACAGTATGTATTTGACTTTTTATTAGACAATCTCTCAGTTCTTCTGCATGTTGAGTCCGAGTCTAACTCGTGCCGTGTTCCTGTGCTGAAAGAAAGGCATTCTTGGTGGCATTGTGAGAGCTTACAGTCAAAATGGAGTTAAGAGTAACACCTAGGTTCCAGATCCTCTAGTTTGCTcaatatttttgatatttcTTAGGCCGTCTTTAACACCAGCTTTGTCCCTGAGGCTGAAGGCATAGCGGTGTGCACGAAGGTCCTATACGGGTCATCCGCCGTCTTCTTACATATATGCAGTGTCTATGTAAAGTAGCCTTATGCCTGCACTAATTTTAGATTTCTATAAAGACTGTGCTTGTAAACACTCAGTGGATTGTGGGTACTCAAGAGATTGGTTTCTTTTGCATTCTTCTTTTTGCATTCCTCTAGGAATTTGACCGTTTTTAGTTCAAGCCCGTCTGATTGAGTGATTGATTGGATTCAGGTAGTTGGACGATCCAGTCTTAATCATGGTGTGCCGCTGCAGTGGTTGTAGTAGAGGGAGGATGCTCTTTGGGATGCTGTGGTGTCGGAGCAGTCTTTGGAAAGCTGATTCTGGATGTTGGTGTAGGACAGGGGGTCATCAGTTCTGGACTATTTGGATCATTACTTTTTAATCAGACACACTTATTAAACAGATGAGTCAAGTCTGAACTCCAGGACCAGAACTGATGACCCTCATTTAGTCAGTTTCATTAGTTAGTTTGCAGTCAAAGGGCTTTTGGGCAGTCTCTGACGTTCCTTGCTTGCGTCACGTTAGCTTTTTAATGCTTAATAGTCTGAGACCAGTGCTGCTTCCAAAACCACATACTGTGCTGATTTGTGTGATGTTTTAAGAAGTTCATCAGAGTATCATGGGTATTGTCAGTACTAATGAATAGTTGATCAAGGTCCATGTACACTGTACTATGTTCTGTTGTTTCacattgtaaaaaagaaaaagaaaaagaaatggctTAATTTTACAAACTAATCATTTATCTACAAATAACAAACAGAAATGTAATACACGTTTGTACTTCATTTATCCAAATCTAAAATTTCCTGTCACTTCAAGTAAAGATATGAATATACATAATGTATAGctctggaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121822 True 4027 lncRNA 0.38 2 12873021 12899679

Neighbor

gene id symbol gene type direction distance location
LOC103038418 LOC108436530,LOC108262988,LOC106580249,LOC107567515,LOC105908886 coding downstream 41170 12804670 ~ 12831851 (-)
LOC103037451 gatad2b,LOC108436554,LOC108270204 coding downstream 155015 12675171 ~ 12718006 (-)
polr3gl polr3gl,LOC107714326,LOC107666760,LOC107592290 coding downstream 239415 12623845 ~ 12633606 (-)
muc1 NA coding downstream 346064 12517205 ~ 12526957 (-)
dcst2 NA coding downstream 461198 12394273 ~ 12411823 (-)
LOC103023525 crtc2,LOC108436548,LOC106580288,LOC106605456 coding upstream 2598 12902277 ~ 12926324 (-)
gsdme NA coding upstream 99658 12999337 ~ 13016408 (-)
c10h7orf31 NA coding upstream 245386 13145065 ~ 13159169 (-)
LOC111193301 NA coding upstream 358021 13257700 ~ 13259044 (-)
LOC103047375 grik2,LOC108271497 coding upstream 634929 13534608 ~ 13780573 (-)
G90547 NA non-coding downstream 80066 12792443 ~ 12792955 (-)
G90438 NA non-coding downstream 234697 12638089 ~ 12638324 (-)
G90429 NA non-coding downstream 269906 12601507 ~ 12603115 (-)
LOC111193333 NA non-coding downstream 285473 12585443 ~ 12587548 (-)
G90405 NA non-coding downstream 358347 12512003 ~ 12514674 (-)
G90567 NA non-coding upstream 40497 12940176 ~ 12944190 (-)
G90570 mpp6,LOC108267518,LOC107550794,LOC107749029,LOC107685533 non-coding upstream 72615 12972294 ~ 12981286 (-)
G90580 NA non-coding upstream 238212 13137891 ~ 13138334 (-)
G90613 NA non-coding upstream 467570 13367249 ~ 13367763 (-)
G90621 NA non-coding upstream 533240 13432919 ~ 13433470 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other downstream 129804 12720969 ~ 12743217 (-)
LOC103024123 LOC108436541 other downstream 703327 12162288 ~ 12169694 (-)
LOC103031398 dgat1b,LOC108436588,LOC108267870,LOC107741726,LOC107552801,LOC107671724,LOC107724797 other downstream 1243020 11608471 ~ 11630001 (-)
LOC103045558 ensab,LOC103045558,LOC108441925,LOC108268136,LOC107741750,LOC107663348,LOC107587831,LOC107597988 other downstream 2129304 10732935 ~ 10743717 (-)
vps72 vps72,LOC107571619 other downstream 2177687 10682356 ~ 10695334 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other upstream 50933 12950612 ~ 12967291 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other upstream 122316 13021995 ~ 13135114 (-)
G90788 NA other upstream 1358276 14257955 ~ 14258956 (-)
LOC103022461 NA other upstream 2224834 15124513 ~ 15130106 (-)
G91187 NA other upstream 2423621 15323300 ~ 15324097 (-)

Expression


Co-expression Network