gsdme


Basic Information

Item Value
gene id gsdme
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12999337 ~ 13016408 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233377.3
gagagaaagagataataCAGCGAGGAAAGAAGACTCTCCGGAAGagaacagatacagatacagacagTGGAGGACTGTGTGAATGTGAGACTCGGGGCTCtggagaagaagcagaagagacGTCGAGGTTCTACAGCCCAGGTTCTACATTAAGAAGATGTTTGCCAAAGCGACCAGTAAATTTGTGACTGAGATCGACCCTGATGGCTGTCTGATCCCTGTGTCCCGACTGAACGAGTCGGACAACCTCACGCTCACGTCGCTGGTCATTAAGCGCAGTCGCTTCTGGTTCTGGCAGCGACCCAAATACCTACCATCAGACTTTACCCTCAATGATTTACTGCAGGGAGAAACTAAAATAGATCCAGGTTTGATTGAAACAGATTTTCTGAAGTATAACAGTACATTAGAAAATAATACCAGTGGAGCAGCTGAAGCAGGCTTTGGTCCAGGTAACGTAAATCTGTCAGGAAAAGGTTCATCCAAGCTTGCTTCTTCATTTGGAAACCTCAAAAAGCAGGAACTGGATCTACAAAAAGTGCTGGATCAAACTAAAGACAGAGTTCTGGACATGCAGCACTCTCTGATCCAGCAGACACAGCAGAAGCGTACGGAGGTGTTTGCGCTGGTGAAGGAGCGCATCGTGACCACACAGCCCTGCACCGTTACTGAAGAAGTGCAGGAGGGGGGAAGCTGTGGAGCCTTTTTTGGGCTCACTGTGCCCAAGAAGATTAGTGTTTCAGTGAAGAATGGCAGCCATCAGTCTGACAGTAATGTTTCAGTAGAAATCCCAGCCAAGACTGCCCTCGCTTACTGTCTGATCGAGCTCAGTGTGAAGGCCACGGGTCAATTCGAGCTGTGTCTAATGCCGGACACCTACGGATCCATGGAGGTGGACGGGCCTGTAAAGAAGAATGTGGCCATGGTCTACGGCGCACCACCCCAAACACCAAACAAACAGCTGCAGAGAGagttgAATGAACTGCAGTCCCAGTTTGCCATACTCTCAGGACTTCCGGCCAGCACACGCTCCAGCCTCCTCCAGCAGCTCACTGCCCTCCTGAAGGACAAAACCGCCATCAGTGCACTAGACCTTGCAATAGAGGATCTGTGCTGCGGTAAGAAGCCTGATCTGAGCACCCTGGATAAAACCCCCTCCCTGAAAGCAGCAGTGAAGACCACCCTGGAGCTTCTTCAGAGCAGTAGCCCCACATCTCACAGCAAATCTCCACAGAAAAGAAACTCTTCTGAGGATCGGCTTAAGCCTTCCATCTTTACTTCTGCCAATGTCCTCACCAGTGCCTTAGACGAAATGACTGACTCAACCCTCTTACTGCTGAAATCCTGCTGCCAGTCCTCCAGCATACATGCACTGCAAGCCCTGGTGCAGAATGTGGTTGGGAATAAGACGTGTTCTCTGAAGGACCGCAGTGTCTCTGCTTTAGCTGAGGAGAAGACGTTCAGCAGAGTGAAGGCACTCTTTGACTCCTCCAACATCACGCTGTGTAAAGAGGAAGACGCTGTGAGAGCAGAGATCAGAAGCCAGCAGGGACATGCTCCTCTCATCCTGTGCATCGCCATCCGTGGTCTGGCCTGTTTAGCGACACCTGCCTGATCTGGATGTGTGCTCAGGACAGactgacattttaaataaacagtaaacagcatgTTTGGTAGGACCAAGACAATCGTTGTAACTGTGAAAGCTTGTTTTTTAGATGCATCTtcctaatttgttttttaataattatgggcatttttatatttttaatgattattcAAGTTCAGGTTCATCAAACTCCCCTTTTCTgccttttttaaaactgtaaaatgaaaaagttaCTCATTTGTAATATAAATTTTTACATATGTGTTGTTTTCtgaggttttatattttttattttttgtaaaataacttTGCATATCAGTCCAAATCATGTGTTTAATGTCCTTTGTTTGTGTGAATTcttacagtaaaacatgcatGTCAGTGCTTCCTCAActagaacaaaaataaatactttgatTTGTACATAAATATTGTCCTTTAGATTAAATTTatgtaactttaaaa

Function

GO:

id name namespace
GO:0042472 inner ear morphogenesis biological_process
GO:0009889 regulation of biosynthetic process biological_process

KEGG:

id description
K22146 DFNA5; non-syndromic hearing impairment protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233377.3 True 2074 mRNA 0.45 10 12999337 13016408

Neighbor

gene id symbol gene type direction distance location
LOC103023525 crtc2,LOC108436548,LOC106580288,LOC106605456 coding downstream 73013 12902277 ~ 12926324 (-)
dennd4b dennd4b,LOC106605454,LOC106580258 coding downstream 107421 12841911 ~ 12891916 (-)
LOC103038418 LOC108436530,LOC108262988,LOC106580249,LOC107567515,LOC105908886 coding downstream 167486 12804670 ~ 12831851 (-)
LOC103037451 gatad2b,LOC108436554,LOC108270204 coding downstream 281331 12675171 ~ 12718006 (-)
polr3gl polr3gl,LOC107714326,LOC107666760,LOC107592290 coding downstream 365731 12623845 ~ 12633606 (-)
c10h7orf31 NA coding upstream 128657 13145065 ~ 13159169 (-)
LOC111193301 NA coding upstream 241292 13257700 ~ 13259044 (-)
LOC103047375 grik2,LOC108271497 coding upstream 518200 13534608 ~ 13780573 (-)
LOC103042169 ptchd3a,LOC108428942,LOC107712800,LOC107599657,LOC107732096,LOC107677105 coding upstream 1130461 14146869 ~ 14151372 (-)
LOC103045045 LOC108428908 coding upstream 1137793 14154201 ~ 14163418 (-)
G90570 mpp6,LOC108267518,LOC107550794,LOC107749029,LOC107685533 non-coding downstream 18051 12972294 ~ 12981286 (-)
G90567 NA non-coding downstream 55147 12940176 ~ 12944190 (-)
G90545 NA non-coding downstream 99658 12873021 ~ 12899679 (-)
G90547 NA non-coding downstream 206382 12792443 ~ 12792955 (-)
G90438 NA non-coding downstream 361013 12638089 ~ 12638324 (-)
G90580 NA non-coding upstream 121483 13137891 ~ 13138334 (-)
G90613 NA non-coding upstream 350841 13367249 ~ 13367763 (-)
G90621 NA non-coding upstream 416511 13432919 ~ 13433470 (-)
G90623 NA non-coding upstream 437780 13454188 ~ 13454482 (-)
G90629 NA non-coding upstream 467154 13483562 ~ 13483827 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other downstream 32046 12950612 ~ 12967291 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other downstream 256120 12720969 ~ 12743217 (-)
LOC103024123 LOC108436541 other downstream 829643 12162288 ~ 12169694 (-)
LOC103031398 dgat1b,LOC108436588,LOC108267870,LOC107741726,LOC107552801,LOC107671724,LOC107724797 other downstream 1369336 11608471 ~ 11630001 (-)
LOC103045558 ensab,LOC103045558,LOC108441925,LOC108268136,LOC107741750,LOC107663348,LOC107587831,LOC107597988 other downstream 2255620 10732935 ~ 10743717 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other upstream 5587 13021995 ~ 13135114 (-)
G90788 NA other upstream 1241547 14257955 ~ 14258956 (-)
LOC103022461 NA other upstream 2108105 15124513 ~ 15130106 (-)
G91187 NA other upstream 2306892 15323300 ~ 15324097 (-)
G91208 NA other upstream 2743553 15759961 ~ 15766432 (-)

Expression


Co-expression Network