G91183


Basic Information

Item Value
gene id G91183
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15276161 ~ 15279369 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU122634
TGTTAAAGCAATAAATACAGTctgaagaagcttattaaacaaaatgtaaataactgATCTGCCTTCtaaagagaaaacattttatttgggtTCAAATTTGAACCCAGCAAGACAAATGCCATCAATCATGGTTGAATAcccaaaatgtaattaattaaagtcATCAACCCATCTTTGAAACATAACAAAAATGTACCATATTTACCCTTTTCTGAGCATGGCATTCCAGAACATTTGTTCTGAGGGATAAACCCAGTTTTTATCTGTTCCAGCTCTGGGAATTTTGGATTCCTCTCTATTAATTGGCAATGTAAAAGGCTGGTCGGGAGCTGGCTGCTGGTTAGGGGGTGGCATCATATTTGTTGGATCGATGTCAGATGTGCCTTCTCGTGCAGCTTTCATTGGGCACTCCACAAACTCATAGGCCCTGTCCTGGTGCACTGGTCCAGCGGGAGCGGGAGCAGGAGACTCCGCTTTATGCATGGGGCACTCCGATGGATAGGAACTCTTCTTGGTTTCCTGATGCATAGGGCAACCTGATGGTGGCGAGAGGTTACCAAACTGAGCTGGCACTgttgcagcctcagctttcacAGTGGAAGCCGGAGTAGACACTGAGGCACCCATTCTGAATCCTCCTCCTTTTGTGATGagattaaaataatcaaattatgaAATGCATTAGATGGCCAAACAAAATGACATAAAAACA
>TU122635
TGTTAAAGCAATAAATACAGTctgaagaagcttattaaacaaaatgtaaataactgATCTGCCTTCtaaagagaaaacattttatttgggtTCAAATTTGAACCCAGCAAGACAAATGCCATCAATCATGGTTGAATAcccaaaatgtaattaattaaagtcATCAACCCATCTTTGAAACATAACAAAAATGTACCATATTTACCCTTTTCTGAGCATGGCATTCCAGAACATTTGTTCTGAGGGATAAACCCAGTTTTTATCTGTTCCAGCTCTGGGAATTTTGGATTCCTCTCTATTAATTGGCAATGTAAAAGGCTGGTCGGGAGCTGGCTGCTGGTTAGGGGGTGGCATCATATTTGTTGGATCGATGTCAGATGTGCCTTCTCGTGCAGCTTTCATTGGGCACTCCACAAACTCATAGGCCCTGTCCTGGTGCACTGGTCCAGCGGGAGCGGGAGCAGGAGACTCCGCTTTATGCATGGGGCACTCCGATGGATAGGAACTCTTCTTGGTTTCCTGATGCATAGGGCAACCTGATGGTGGCGAGAGGTTACCAAACTGAGCTGGCACTgttgcagcctcagctttcacAGTGGAAGCCGGAGTAGACACTGAGGCACCCATTCTGAATCCTCCTCCTCAGCCCCTCGCTCACACACTGCAGTCTGATCCCCCCAATGTCAAcgtgctgctctctctctttgcttcttcctctctcacactgtaACACAGCGCGCCGCACTACCGCCCACTACAGGCTGAACACAGCGGTCTCCAGCTCacagagaccact

Function

GO: NA

KEGG:

id description
ko00640 Propanoate metabolism
ko00280 Valine, leucine and isoleucine degradation
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU122634 False 712 lncRNA 0.43 3 15278295 15279369
TU122635 True 796 lncRNA 0.47 4 15276161 15279369

Neighbor

gene id symbol gene type direction distance location
f3 NA coding downstream 115415 15154698 ~ 15160746 (-)
LOC103021960 LOC108428923 coding downstream 155273 15112593 ~ 15120888 (-)
cpne3 cpne3,LOC107712810,LOC107657769,LOC107739025,LOC107677279 coding downstream 165713 15094967 ~ 15110448 (-)
cnbd1 NA coding downstream 217301 15007236 ~ 15058860 (-)
vim vim,LOC107098299,LOC107732120 coding downstream 755021 14513488 ~ 14521140 (-)
dpyd dpyd,LOC107677268,LOC107590279,LOC106578501 coding upstream 246551 15525920 ~ 15732876 (-)
plppr5 plppr5,LOC107739033,LOC107677304,LOC107712819,LOC107657749 coding upstream 593628 15872997 ~ 15962933 (-)
frrs1 NA coding upstream 795317 16074686 ~ 16092755 (-)
ano10 ano10,LOC107751882,LOC107601655,LOC107657579 coding upstream 975606 16254975 ~ 16292970 (-)
cnot10 cnot10 coding upstream 1143954 16423323 ~ 16435328 (-)
G91178 tmem56a,LOC103024964,LOC108428968,LOC107677262,LOC107578871,LOC107712816 non-coding downstream 1262 15248603 ~ 15274899 (-)
G91179 NA non-coding downstream 5429 15263853 ~ 15270732 (-)
G91176 NA non-coding downstream 40157 15235089 ~ 15236004 (-)
G91169 cnn3,cnn3a,LOC108269615,LOC108428967,LOC107657766,LOC107739018 non-coding downstream 43619 15222816 ~ 15232542 (-)
G91168 NA non-coding downstream 70344 15203385 ~ 15205817 (-)
G91184 NA non-coding upstream 505 15279874 ~ 15280251 (-)
G91185 LOC108428970,LOC108273189,LOC106578494 non-coding upstream 2149 15281518 ~ 15282969 (-)
G91189 NA non-coding upstream 51178 15330547 ~ 15331185 (-)
G91195 NA non-coding upstream 152269 15431638 ~ 15431863 (-)
G91198 NA non-coding upstream 183244 15462613 ~ 15462985 (-)
LOC103022461 NA other downstream 146055 15124513 ~ 15130106 (-)
G90788 NA other downstream 1017205 14257955 ~ 14258956 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other downstream 2141047 13021995 ~ 13135114 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other downstream 2308870 12950612 ~ 12967291 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other downstream 2532944 12720969 ~ 12743217 (-)
G91187 NA other upstream 43931 15323300 ~ 15324097 (-)
G91208 NA other upstream 480592 15759961 ~ 15766432 (-)
pomgnt2 pomgnt2,LOC107657577,LOC107732433,LOC107551215,LOC107751881,LOC107704096,LOC107601673 other upstream 895584 16174953 ~ 16191275 (-)
LOC103036883 NA other upstream 1469553 16748922 ~ 16761761 (-)
G91479 NA other upstream 1806876 17086245 ~ 17089037 (-)

Expression


Co-expression Network