G91621 (gpn2,LOC107700685,LOC107704877)


Basic Information

Item Value
gene id G91621
gene name gpn2,LOC107700685,LOC107704877
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 17627288 ~ 17628669 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU123241
TGTGAATTGAGCAGAAGTGAAATATGTTGTAATAATCTACATTGATTAATTAGTGCTGAGTGAACAGTGTACAGTCCTGTGTGTGATAAGGTGTACAAGTATTTTTCTTAAACTCTAATTCACGACACACCTTTACACCTACTCACCCAGCTTGCCATACTGCTCAACCAGGTCCATCTTAGAGAGCACATTGACATGAGGCAGTTCCACCTGGAGCATGGTGGACAGGGAGGTGCAGAGCACAGAAATGAACTTGGCTGGCTCAGCACAGTAATGGGAGTCCACCAGATGCACAGCTGACAACCTGAAATTCCACTTGGACAACTGGGCGAATATATTTCTGACAGAACTATGGTGGGTGTAGAGCTCCACCTGGCCTGGACAGTCGAAAAGGAAGTAGTAATCCTGATGCTCCTTAAACTTGCCTTCCAACCAGTCCAAATTAGCCTCCAGGTATTCCATACAGTAAATTAGGCCTCCATTAGGACCCAGTTTCAGACCGTCCATTACATCATCCAGGGTGACGAGCTCTGATATGTCCACTGCACATGTATAAGGCAGACCATCGTTTGCAGGGTCCATGTTTACTACTACGACCTTACGGCCCAGGTGGCTCAGGAACTCTTGCATTGCGCGGCAGTAGGTTGTTTTACCTGAGCCAGGAGGCCCAATAACCACCTGACCGAATCGCAGGGAGGGCTGCTTGGGTTGAGAAGACATGATCCAAGTTCTCCACTACACAAGAAAACATTAACCAACTGTCTATACAAATATAAGAGACTCCACAGAAAGTGTGCACTGCAATTCACTCACAGCTGATTCTACACGCCGTCTGGTTTAAAGCGTGAGACATTATAGCTACAGTTAGTAGAGAGCTAGATGCGATTTGTGTCGTTATATTAATGAGCTGGGCTTTTTAAACTAGCtaaactaactaacctagctaactacattACAACCTACACCCATATAACAACCAGCCTGCTTCCAAATAACAATTACAGGCGTTTAGAGTTTGAACCCAGAAATGcagacttttatttattataacaaataattatttaatacttaataattttaaaataatcaattcGAATAGCAAACCAACTAGCTAGCCTTAGGTAGCACTTGGTTAACTTAACTTACATAATAAAGAGTTACTTTATACCTCCTAAGCTAAAGCTTAAAAGGCAACTCGATCCTACcaaaatacaaactaaacattttaattaaaaatgttttaaattacacaaatatgagttgcactgaacagcaaaaaagcaCGAAATAACGATACAT

Function

symbol description
gpn2 Predicted to enable GTPase activity. Orthologous to human GPN2 (GPN-loop GTPase 2).

NR:

description
GPN-loop GTPase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123241 True 1299 lncRNA 0.41 2 17627288 17628669

Neighbor

gene id symbol gene type direction distance location
LOC103041872 phactr4 coding upstream 189089 17383964 ~ 17438199 (+)
LOC111193338 NA coding upstream 260818 17362133 ~ 17366470 (+)
hivep3 hivep3 coding upstream 276344 17272114 ~ 17350944 (+)
LOC103041278 serinc2l,LOC103041278,LOC107587884,LOC108269842,LOC108443421,LOC107732828,LOC107704843,LOC107597105 coding upstream 374591 17240552 ~ 17252697 (+)
LOC103040229 ptprub,LOC108441315,LOC107704844 coding upstream 685881 16829220 ~ 16941407 (+)
dnali1 NA coding downstream 5516 17634185 ~ 17637610 (+)
rspo1 rspo1 coding downstream 79066 17707735 ~ 17753547 (+)
utp11 utp11 coding downstream 231911 17860580 ~ 17865075 (+)
LOC111193302 NA coding downstream 719355 18348024 ~ 18350624 (+)
LOC111193341 NA coding downstream 723294 18351963 ~ 18352643 (+)
G91599 arid1a,LOC107704838 non-coding upstream 41091 17585501 ~ 17586197 (+)
G91597 NA non-coding upstream 51504 17574544 ~ 17575784 (+)
G91547 NA non-coding upstream 118310 17508750 ~ 17508978 (+)
G91537 NA non-coding upstream 141260 17485465 ~ 17486028 (+)
G91534 NA non-coding upstream 157043 17470031 ~ 17470245 (+)
G91628 NA non-coding downstream 28427 17657096 ~ 17659111 (+)
G91633 NA non-coding downstream 49196 17677865 ~ 17678205 (+)
LOC107197683 NA non-coding downstream 284442 17913111 ~ 17925434 (+)
G91690 NA non-coding downstream 302806 17931475 ~ 17931750 (+)
G91708 NA non-coding downstream 431509 18060178 ~ 18090208 (+)
rcc1 NA other upstream 179355 17358839 ~ 17447933 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other upstream 1207908 16395214 ~ 16419380 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 2344233 15276142 ~ 15283055 (+)
alg14 alg14,LOC107739035 other upstream 2410780 15160215 ~ 15216508 (+)
LOC103045856 NA other upstream 2853921 14662657 ~ 14773367 (+)
G91678 NA other downstream 283232 17911901 ~ 17912443 (+)
G91728 NA other downstream 719358 18348027 ~ 18361095 (+)
G91748 NA other downstream 771819 18400488 ~ 18421263 (+)
G91760 NA other downstream 863011 18491680 ~ 18492072 (+)
lyplal1 lyplal1 other downstream 865690 18494359 ~ 18507035 (+)

Expression


Co-expression Network