rspo1 (rspo1)


Basic Information

Item Value
gene id rspo1
gene name rspo1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 17707735 ~ 17753547 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251793.3
GGGCCAGACCGGTGGTGCGCGCGCTGAATGTGCGCTGGCTGGATGGAGTTGGATGGAACTTGCTGAGGCTGAGGCTCGGCTGAGCTGGATGCTGTCCGGGTTTAAAAGTGGATTTATGTGGAGAGCGCTGTAGAGTGACTGCAGGCGCGCGGGAAGAACACGCAGCCGGACGGATCCAGGTCACTGTGTGAAGATTTCTGATTAAAGCTGCTCATTAGAGGCTGCTGGACCTCTGCCTCCACTTCCATCAGTGCAGGAGGATCTGTGACTGACAGCTGCTTCTGAGGAGAAGAGTCCGAGGACAGTGACtgatgacagacagacagacagatacagactGCACTGATACTCAGAGTCTGGAACAAACATGAGAAGAAGATGAGTGGGACAGATCAGAGGAGCAGGTCTTGGCACTGACAGATGCGTTGTCACGCGTAGGATTCCAGAACCTCTCTccatcttctcttttttttctctctttttgtgttCCCCCTCCTCCCAGCATCCCTAATAAGACACATGCTCCTGGGCTGGGGTGCTCACTCACACCAGCCTCTCCTGGCCGCCGCCGTTAAGGGCTACAGGCTGCTTCCAGCGCTGCCCGGCTTCATGGGTTGAAAAGggtctctctctaccactcacTCGCTCTCTGGGCATCTCTCAGCTCTCACTTTCATCTCAGCACATCTCTCTGCACCTGAACCACGTCCACCATCCTCCTGGTCCACGGCTGGGTTATGGCTCGTGCCCTGGGCATGCTTGGACTTGCAGCTGCAGCAGCCTCCGCCGAGGGCAGCGGTGGCCTCAGCTGGCAGTAGAGCGCTCCACCTGCCACAGCGTGGAAGGGGGTGCCCCCCCCCACTGCATCCGTCTGCCTGCAGGGGGAGACCCAGCGCAGCTGGGCAGCAGAGACTATGCAGCTGGGACTGGTGGCACTGGCGGTGGTCTTCCTCAGCTCCATGGGTTACAACAACAGCCTCAAAGTCTCCAGAGGAAGGAGGCACAGACACACAAGTACTGAAGTACCGCCATCATGCTCCAGTGGTTGTGAAAGCTGCTCTGAATACAACGGATGCACCAAATGCCGACCGCGGCTTTTCATCCTTCTGGAGCGGAGTGAAATTCGTCAGACAGGGGTGTGCCTGGCAACCTGTCCTGTAGGATATTACGGCATTCGTAATCGTGATGTGAACAGGTGCACACaatGCAAAATAGAAAACTGCGCAGACTGCTTTAGTCGAACGTTCTGCACAAAATGTAAGGAGGGTTTGTATTCGTACATCGGTCGGTGTTACCACAGCTGCCCTGAAGGCTTAACCACCATCAACAGCACCATGGAGTGTGTAGTGCAATGTGAGCTGGGGGAATGGAGTCAATGGGGCCCTTGCATGAAGAAGAACAAAACGTGTGGTTTCAAAAAGGGCAATCAGAGCCGTAGGAGGGAGCCCACGCAGCCCCCGAGTCCAGCCACTGTCACTGGACACGCGTCTGCCTCTACCTGCGCTCCGGAAACCGAGTCACGGAAGTGCACTGTACAGAAGAGGGTCCCCTGTGGAAAAGGAGACAAGGGGATAGGCTCAAAGAACAAAGGAGCTTCATTCAGCAAAAACCGTGTCCGAGACTCCAAAGAGAACAACAAAGGGGgcggaaaaaggaaaaaggtcCAAACCCCTGCTACTACTTCTCCATCCATTATAACAAGCACGGTGACCTAACCCCGCAGCGGCGTGTAGTGGAGGACTAACAAGCGGAAAGAAGAGTCTGAGGAAGACGAGGACTGAAGAGGAATTATGCTGCTgcacattcacaaaaaaaaggctCAAAGAGAACTGGAGGATTGCTGCAATAAATAATGAACTATGTACTGTATTAAGCTAGGCGAGGAGCAGAGGAAAGGCGTTTGTCTGTGCAGTTGGAAGCACTTTGAAAGACTGTACTTCTGAAGGTTGCCCTTTTGTCAGCCAGCCCGTAACAAGGGTTTGGCGGGCGAGATGTTTTGTACGTCCCACATTTGCATTTGATCAAAGGATTAAAGACTTCTATAGTTACTCTTTGGACGACTCTTCAAATGAAGTGTTCCATCGCTCCATGatttaagaacatttaaaagcCGTTAACATCCTTGTTCATGTTTTCCTAATCACACTTTAATTGGTTTTCCTGCTCCAGTGTCGGCTCTGCTTACTTTTCTGACAGGTACTGAACAGATGGTGTCTGTTGGAGCGCCGTTCGTGTAAGCAGGCCCGGAGAAAATGAACACTACGGAGatactttagttttttatttgtattttatgatGAAACAAAGGCGAGTCACTGGAACTAATTTGTgctttgagagagagaaagaatttaTTTTGATAATGATCGTTTCTTTTGATAAAGTGTTTCAAAATCAATTTGTATGTAAGAGGACACCTAGCGCTCCAACGAACTTGAGCAAGAGTTTGTTAGACAAAGCTTTCCACTTTCATATTCGTTTTAGCTGACTATGTACAACAAGAGGCTGATCAAACAGTACACAGTATTTCGCACAAAGTGTAGTGATCAGACGAATGTAACGAGCGTGTTCGAGTTGTATGTGATCTGTGTTTGAATGGGTGTCtatgtgtctgtttgtttgttttttacatctTTGTGTTCTGTGTTCAGTTCTGTAGGAAAGAGGAATAAAGATTGTGTGATTGGTCAGAATGGTCTGTAAAGGGATGAACTCCCTTATTCATGTTATTCGTGTTACCAAATGTGTGTTGTTTGGTACATGTACAATATGTCTGTCTATAAGTTGGGTCACAGTACACACAGTAGCAGTGTGTAACCAGCCcactaaagcaaaaaaaaaaaacagcagaaaggaatagtaaaaaaaaaaataggaaccTTATACCAGCACAGATATTTCACTAGCCTCTACATACCATACAGCAATCTACATACCATATGGCTGCTCAGTTATTATGCATTTATGTTTGCAACAGGGTCAGATATATTTAGCACATAATCCATGATGATCAGCATTACACACCAGTATCAGAGAAGGCAACACCATTTATTTTTCATGGACAGTATTTGTAGCATTttcttggtcttttttttttttttttgcatgacacaACTACTTGCTTCCTCCAGTAGATATTCACCATGGACCTTCATGACGTGAATTCTAACACTGAAACTTTTGATCTTCTATTGGTTCTGATTacttcattaataaaatatacgtTATGTTATTGTATATCTTATTATTTGATACTcctgcataaaataaaatgtacaatttacttcaataaaatgcagtaaataca
>XM_015606461.2
GGGCCAGACCGGTGGTGCGCGCGCTGAATGTGCGCTGGCTGGATGGAGTTGGATGGAACTTGCTGAGGCTGAGGCTCGGCTGAGCTGGATGCTGTCCGGGTTTAAAAGTGGATTTATGTGGAGAGCGCTGTAGAGTGACTGCAGGCGCGCGGGAAGAACACGCAGCCGGACGGATCCAGGTCACTGTGTGAAGATTTCTGATTAAAGCTGCTCATTAGAGGCTGCTGGACCTCTGCCTCCACTTCCATCAGTGCAGGAGGATCTGTGACTGACAGCTGCTTCTGAGGAGAAGAGTCCGAGGACAGTGACtgatgacagacagacagacagatacagactGCACTGATACTCAGAGTCTGGAACAAACATGAGAAGAAGATGAGTGGGACAGATCAGAGGAGGTCTTGGCACTGACAGATGCGTTGTCACGCGTAGGATTCCAGAACCTCTCTccatcttctcttttttttctctctttttgtgttCCCCCTCCTCCCAGCATCCCTAATAAGACACATGCTCCTGGGCTGGGGTGCTCACTCACACCAGCCTCTCCTGGCCGCCGCCGTTAAGGGCTACAGGCTGCTTCCAGCGCTGCCCGGCTTCATGGGTTGAAAAGggtctctctctaccactcacTCGCTCTCTGGGCATCTCTCAGCTCTCACTTTCATCTCAGCACATCTCTCTGCACCTGAACCACGTCCACCATCCTCCTGGTCCACGGCTGGGTTATGGCTCGTGCCCTGGGCATGCTTGGACTTGCAGCTGCAGCAGCCTCCGCCGAGGGCAGCGGTGGCCTCAGCTGGCAGTAGAGCGCTCCACCTGCCACAGCGTGGAAGGGGGTGCCCCCCCCCACTGCATCCGTCTGCCTGCAGGGGGAGACCCAGCGCAGCTGGGCAGCAGAGACTATGCAGCTGGGACTGGTGGCACTGGCGGTGGTCTTCCTCAGCTCCATGGGTTACAACAACAGCCTCAAAGTCTCCAGAGGAAGGAGGCACAGACACACAAGTACTGAAGTACCGCCATCATGCTCCAGTGGTTGTGAAAGCTGCTCTGAATACAACGGATGCACCAAATGCCGACCGCGGCTTTTCATCCTTCTGGAGCGGAGTGAAATTCGTCAGACAGGGGTGTGCCTGGCAACCTGTCCTGTAGGATATTACGGCATTCGTAATCGTGATGTGAACAGGTGCACACaatGCAAAATAGAAAACTGCGCAGACTGCTTTAGTCGAACGTTCTGCACAAAATGTAAGGAGGGTTTGTATTCGTACATCGGTCGGTGTTACCACAGCTGCCCTGAAGGCTTAACCACCATCAACAGCACCATGGAGTGTGTAGTGCAATGTGAGCTGGGGGAATGGAGTCAATGGGGCCCTTGCATGAAGAAGAACAAAACGTGTGGTTTCAAAAAGGGCAATCAGAGCCGTAGGAGGGAGCCCACGCAGCCCCCGAGTCCAGCCACTGTCACTGGACACGCGTCTGCCTCTACCTGCGCTCCGGAAACCGAGTCACGGAAGTGCACTGTACAGAAGAGGGTCCCCTGTGGAAAAGGAGACAAGGGGATAGGCTCAAAGAACAAAGGAGCTTCATTCAGCAAAAACCGTGTCCGAGACTCCAAAGAGAACAACAAAGGGGgcggaaaaaggaaaaaggtcCAAACCCCTGCTACTACTTCTCCATCCATTATAACAAGCACGGTGACCTAACCCCGCAGCGGCGTGTAGTGGAGGACTAACAAGCGGAAAGAAGAGTCTGAGGAAGACGAGGACTGAAGAGGAATTATGCTGCTgcacattcacaaaaaaaaggctCAAAGAGAACTGGAGGATTGCTGCAATAAATAATGAACTATGTACTGTATTAAGCTAGGCGAGGAGCAGAGGAAAGGCGTTTGTCTGTGCAGTTGGAAGCACTTTGAAAGACTGTACTTCTGAAGGTTGCCCTTTTGTCAGCCAGCCCGTAACAAGGGTTTGGCGGGCGAGATGTTTTGTACGTCCCACATTTGCATTTGATCAAAGGATTAAAGACTTCTATAGTTACTCTTTGGACGACTCTTCAAATGAAGTGTTCCATCGCTCCATGatttaagaacatttaaaagcCGTTAACATCCTTGTTCATGTTTTCCTAATCACACTTTAATTGGTTTTCCTGCTCCAGTGTCGGCTCTGCTTACTTTTCTGACAGGTACTGAACAGATGGTGTCTGTTGGAGCGCCGTTCGTGTAAGCAGGCCCGGAGAAAATGAACACTACGGAGatactttagttttttatttgtattttatgatGAAACAAAGGCGAGTCACTGGAACTAATTTGTgctttgagagagagaaagaatttaTTTTGATAATGATCGTTTCTTTTGATAAAGTGTTTCAAAATCAATTTGTATGTAAGAGGACACCTAGCGCTCCAACGAACTTGAGCAAGAGTTTGTTAGACAAAGCTTTCCACTTTCATATTCGTTTTAGCTGACTATGTACAACAAGAGGCTGATCAAACAGTACACAGTATTTCGCACAAAGTGTAGTGATCAGACGAATGTAACGAGCGTGTTCGAGTTGTATGTGATCTGTGTTTGAATGGGTGTCtatgtgtctgtttgtttgttttttacatctTTGTGTTCTGTGTTCAGTTCTGTAGGAAAGAGGAATAAAGATTGTGTGATTGGTCAGAATGGTCTGTAAAGGGATGAACTCCCTTATTCATGTTATTCGTGTTACCAAATGTGTGTTGTTTGGTACATGTACAATATGTCTGTCTATAAGTTGGGTCACAGTACACACAGTAGCAGTGTGTAACCAGCCcactaaagcaaaaaaaaaaaacagcagaaaggaatagtaaaaaaaaaaataggaaccTTATACCAGCACAGATATTTCACTAGCCTCTACATACCATACAGCAATCTACATACCATATGGCTGCTCAGTTATTATGCATTTATGTTTGCAACAGGGTCAGATATATTTAGCACATAATCCATGATGATCAGCATTACACACCAGTATCAGAGAAGGCAACACCATTTATTTTTCATGGACAGTATTTGTAGCATTttcttggtcttttttttttttttttgcatgacacaACTACTTGCTTCCTCCAGTAGATATTCACCATGGACCTTCATGACGTGAATTCTAACACTGAAACTTTTGATCTTCTATTGGTTCTGATTacttcattaataaaatatacgtTATGTTATTGTATATCTTATTATTTGATACTcctgcataaaataaaatgtacaatttacttcaataaaatgcagtaaataca

Function

symbol description
rspo1 Predicted to enable G protein-coupled receptor binding activity and heparin binding activity. Acts upstream of or within angiogenesis; hematopoietic stem cell differentiation; and vascular endothelial growth factor receptor signaling pathway. Located in Golgi apparatus and cytosol. Is expressed in several structures, including nervous system; regenerating fin; reproductive system; steroid hormone secreting cell; and tail bud. Orthologous to human RSPO1 (R-spondin 1).

NR:

description
R-spondin-1-like

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0008201 heparin binding molecular_function

KEGG:

id description
K19471 RSPO1; R-spondin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251793.3 True 3307 mRNA 0.47 6 17707735 17753547
XM_015606461.2 False 3304 mRNA 0.47 6 17707735 17753547

Neighbor

gene id symbol gene type direction distance location
dnali1 NA coding upstream 70125 17634185 ~ 17637610 (+)
LOC103041872 phactr4 coding upstream 269536 17383964 ~ 17438199 (+)
LOC111193338 NA coding upstream 341265 17362133 ~ 17366470 (+)
hivep3 hivep3 coding upstream 356791 17272114 ~ 17350944 (+)
LOC103041278 serinc2l,LOC103041278,LOC107587884,LOC108269842,LOC108443421,LOC107732828,LOC107704843,LOC107597105 coding upstream 455038 17240552 ~ 17252697 (+)
utp11 utp11 coding downstream 107033 17860580 ~ 17865075 (+)
LOC111193302 NA coding downstream 594477 18348024 ~ 18350624 (+)
LOC111193341 NA coding downstream 598416 18351963 ~ 18352643 (+)
LOC103024770 NA coding downstream 600616 18354163 ~ 18354889 (+)
LOC111193340 NA coding downstream 605376 18358923 ~ 18361117 (+)
G91633 NA non-coding upstream 29530 17677865 ~ 17678205 (+)
G91628 NA non-coding upstream 48624 17657096 ~ 17659111 (+)
G91621 gpn2,LOC107700685,LOC107704877 non-coding upstream 79066 17627288 ~ 17628669 (+)
G91599 arid1a,LOC107704838 non-coding upstream 121538 17585501 ~ 17586197 (+)
G91597 NA non-coding upstream 131951 17574544 ~ 17575784 (+)
LOC107197683 NA non-coding downstream 159564 17913111 ~ 17925434 (+)
G91690 NA non-coding downstream 177928 17931475 ~ 17931750 (+)
G91708 NA non-coding downstream 306631 18060178 ~ 18090208 (+)
G91721 NA non-coding downstream 522609 18276156 ~ 18276397 (+)
G91723 NA non-coding downstream 571913 18325460 ~ 18325723 (+)
rcc1 NA other upstream 259802 17358839 ~ 17447933 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other upstream 1288355 16395214 ~ 16419380 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 2424680 15276142 ~ 15283055 (+)
alg14 alg14,LOC107739035 other upstream 2491227 15160215 ~ 15216508 (+)
LOC103045856 NA other upstream 2934368 14662657 ~ 14773367 (+)
G91678 NA other downstream 158354 17911901 ~ 17912443 (+)
G91728 NA other downstream 594480 18348027 ~ 18361095 (+)
G91748 NA other downstream 646941 18400488 ~ 18421263 (+)
G91760 NA other downstream 738133 18491680 ~ 18492072 (+)
lyplal1 lyplal1 other downstream 740812 18494359 ~ 18507035 (+)

Expression


Co-expression Network