LOC103024770


Basic Information

Item Value
gene id LOC103024770
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18354163 ~ 18354889 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC103024770
acTTTCATTTCCTTTTCCTTTAAAACTCATCTCCTCACTGCTCTCAGCACCGAGCATTCACACTGCTAACCCCGTCCACCAGCACTGAACAATGTacatctcactctttctcttagCTCTCTGGAGTTCAGcttcactggGGATCATCACAGTAGATCAGTCTCCTCAGGTCATCTCCGCCCAGCCTCAGGACACTGTGAAGATTCTTTGTAGAGCTTCACAGGACATTGGTGATGACATGGAGTTATTTCAGTTTAAACCTGGTCAGGCTCCTAAACTTGTGATTCATGACAGTACATACAGAGCTTCTGGTATTCCTGAGAGATTCAGTGGTTTAGAATCAGGAGCTCTGACTACATTCACCATCTCAGGAGTTCAGCTGGAGGATGAAGCTGAGTATCACTGTGCTCACAGTGCAGAGCTTCCATTCACACAGTGAAAAAACGCCGTACAAAAACCTCTGACTGTTTCTCTGCTTGACTGATCACTTACTGACAGCCTGACTTCATGTTAGCAGTTAAACATTCACTATAAAAAAGAACACTATGCAATGTACAATAACATGCTGGCAGA

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04662 B cell receptor signaling pathway
ko05150 Staphylococcus aureus infection
ko05140 Leishmaniasis
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC103024770 True 573 V_segment 0.44 2 18354163 18354889

Neighbor

gene id symbol gene type direction distance location
LOC111193341 NA coding upstream 1520 18351963 ~ 18352643 (+)
LOC111193302 NA coding upstream 3539 18348024 ~ 18350624 (+)
utp11 utp11 coding upstream 489088 17860580 ~ 17865075 (+)
rspo1 rspo1 coding upstream 600616 17707735 ~ 17753547 (+)
dnali1 NA coding upstream 716553 17634185 ~ 17637610 (+)
LOC111193340 NA coding downstream 4034 18358923 ~ 18361117 (+)
rrp15 rrp15 coding downstream 13882 18368771 ~ 18374278 (+)
tgfb2 tgfb2,LOC106584161,LOC106605021 coding downstream 26807 18381696 ~ 18416725 (+)
adcy3 adcy3,adcy3a,LOC107703925,LOC107688975 coding downstream 198733 18553622 ~ 18581597 (+)
LOC103027397 wdr26,LOC103027397,LOC108434195,LOC108270098,LOC105017621 coding downstream 228126 18583015 ~ 18594786 (+)
G91723 NA non-coding upstream 28440 18325460 ~ 18325723 (+)
G91721 NA non-coding upstream 77766 18276156 ~ 18276397 (+)
G91708 NA non-coding upstream 263955 18060178 ~ 18090208 (+)
G91690 NA non-coding upstream 422413 17931475 ~ 17931750 (+)
LOC107197683 NA non-coding upstream 428729 17913111 ~ 17925434 (+)
G91836 NA non-coding downstream 372720 18727609 ~ 18727825 (+)
G91837 cenpw,LOC107668290,LOC107600551,LOC107666774 non-coding downstream 373818 18728707 ~ 18739376 (+)
G91853 hint3 non-coding downstream 455972 18810861 ~ 18813397 (+)
G91867 NA non-coding downstream 478559 18833448 ~ 18834103 (+)
G91881 NA non-coding downstream 653574 19008463 ~ 19009460 (+)
G91678 NA other upstream 441720 17911901 ~ 17912443 (+)
rcc1 NA other upstream 906230 17358839 ~ 17447933 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other upstream 1934783 16395214 ~ 16419380 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 3071108 15276142 ~ 15283055 (+)
alg14 alg14,LOC107739035 other upstream 3137655 15160215 ~ 15216508 (+)
G91748 NA other downstream 45599 18400488 ~ 18421263 (+)
G91760 NA other downstream 136791 18491680 ~ 18492072 (+)
lyplal1 lyplal1 other downstream 139470 18494359 ~ 18507035 (+)
LOC103028566 fez2 other downstream 249149 18604038 ~ 18613717 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other downstream 1376923 19731812 ~ 19755475 (+)

Expression


Co-expression Network