G91837 (cenpw,LOC107668290,LOC107600551,LOC107666774)


Basic Information

Item Value
gene id G91837
gene name cenpw,LOC107668290,LOC107600551,LOC107666774
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18728707 ~ 18739376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU123508
GCAGATATTACACAGAAATAATGTGCAAAttcaagagaaaaaaagaaaatgtggtTGCAGATATTCCAAACAATCTTATTCACAACTGTTTCTCAACACCAACCAAAAGCAAAAGATCAGCATTAATAAAGAGCGAACAGTGATCGACTGCAGCTGGGAGTCAGGACTGTTCACAGGTTGGGGCTAGACGTAAAATTAGACAAGTACATTTTGAACATAAGGGGTCTTGTGGAAGTCTGGTGCAGTTGGGTCCATTGAGGGGTGAGCCTGGTGGGAAGAACACGGAGTACCAGACTTGGAGCATTAAGACTGGAGCGTTATGCAGCTTCAGGCTCTCATGGGAGCAAACttcagtaacactttattttacagtgcTCCTATTACACTGTAAGGAGCAGTGTTCTATTAAAGTAGTGCTGAATAAATGTTTTGAATATGGTAACAAGACCCATGTTGTAAAAGTActagttttagcattagcattagcggtatGATTGAAAATGCATTCTCTgaagtgatggagctccattagaTTCATTTGAAGGGGTATTTGTGAACTAGTCCTAATCAACCCACATCAGTACCGGACCCTCATTAAAATTCTTGaggctgaatgcaattaaatcctcacagcaatgtttcagCATCTAGTGTAAAGCTTTTCAAGAAAAGTAGAGAATGTTACTGAAGCAAAGGGGgacaatttttaaatgattaaataataagtaaaaaatattaatgggacacatgctcattcaatgttttttttcaaaataaatgctgtttaaaacaattaattacTCACTCTCTAATATTCAGataaggctttctactagatttctGAGGATTGGTGTgtgaatttgattgtattcagcaacaagagcattaaTGAGGGCATGGTGTTGAATGGTCAACCCACCTCAGGATGGGGGTTTAAACCCCGCTAGCTCACACCTGACATTAGACATGCtgtcaataggttcatgtttatctgctccagagagtcttaCTCACTTGGCAATACCTccctacagggactagacaggATATATCGGTGTGCATTTACATATCTGTAAGCAacaggtgcaacttaaagtagcggaacaaattaattaaaaatgtatttacatggCCCTTGCTTTGTACAAACAGCACTCTTAAATAAGGGGTTACTCAATCTTCTTCTGTCTCATCCTCTTGTGCTCTTCAACAGATtCTTTGCAACAGCTTGGACATGGTGAACTTTGATAGTGGCTGTTTTTTCCTCAAAGGCCTTCACTCTGGATTCTTCTGCCAATCGGTGTAAGACGAGAAGCAGATTCAGCTGGACCATTAGGTCTGCGTTCTTCCCCACGCGGATATCCGGCTTCTTCCTCATGTGAGATTTGAGCGCTGCTCGCGGCGCTTTCCTGGTGGACATGTTGGTGTCGGTCTGCTCGGTTTTCTGTGATAAAAAGTCTCTCAGAGCAGCAGCGCCGAAAACAACACCCGTTCAAATACTGCCGCGCGCTTCTCCCTCAGCGCACAGCGATGAC

Function

symbol description
cenpw Predicted to enable DNA binding activity and protein heterodimerization activity. Acts upstream of or within central nervous system development and regulation of mitotic cell cycle. Predicted to be active in kinetochore and nucleoplasm. Is expressed in digestive system; heart; kidney; nervous system; and pectoral fin bud. Orthologous to human CENPW (centromere protein W).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123508 True 1535 lncRNA 0.41 3 18728707 18739376

Neighbor

gene id symbol gene type direction distance location
LOC103027397 wdr26,LOC103027397,LOC108434195,LOC108270098,LOC105017621 coding upstream 133921 18583015 ~ 18594786 (+)
adcy3 adcy3,adcy3a,LOC107703925,LOC107688975 coding upstream 147110 18553622 ~ 18581597 (+)
tgfb2 tgfb2,LOC106584161,LOC106605021 coding upstream 311982 18381696 ~ 18416725 (+)
rrp15 rrp15 coding upstream 354429 18368771 ~ 18374278 (+)
LOC111193340 NA coding upstream 367590 18358923 ~ 18361117 (+)
LOC107197682 abra coding downstream 62349 18801725 ~ 18808281 (+)
rbms3 rbms3,LOC108434201,LOC107668303,LOC107730162 coding downstream 136830 18876206 ~ 19150127 (+)
tgfbr2 tgfbr2,LOC107730143,LOC107600517,LOC107551196 coding downstream 457117 19196493 ~ 19232951 (+)
LOC103035958 stt3b,LOC108434203,LOC107668300,LOC107666808 coding downstream 514825 19254201 ~ 19320340 (+)
LOC103034694 gpd1l,LOC103034694,LOC108434205,LOC107551192,LOC107600618,LOC107713825,LOC107705153,LOC107666803 coding downstream 690282 19429658 ~ 19437684 (+)
G91836 NA non-coding upstream 882 18727609 ~ 18727825 (+)
G91729 NA non-coding upstream 374159 18351934 ~ 18354548 (+)
G91723 NA non-coding upstream 402984 18325460 ~ 18325723 (+)
G91721 NA non-coding upstream 452310 18276156 ~ 18276397 (+)
G91708 NA non-coding upstream 638499 18060178 ~ 18090208 (+)
G91853 hint3 non-coding downstream 71485 18810861 ~ 18813397 (+)
G91867 NA non-coding downstream 94072 18833448 ~ 18834103 (+)
G91881 NA non-coding downstream 269087 19008463 ~ 19009460 (+)
G91884 NA non-coding downstream 333301 19072677 ~ 19141957 (+)
LOC111193344 NA non-coding downstream 522725 19262101 ~ 19267604 (+)
LOC103028566 fez2 other upstream 114990 18604038 ~ 18613717 (+)
lyplal1 lyplal1 other upstream 221672 18494359 ~ 18507035 (+)
G91760 NA other upstream 236635 18491680 ~ 18492072 (+)
G91748 NA other upstream 307444 18400488 ~ 18421263 (+)
G91728 NA other upstream 367612 18348027 ~ 18361095 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other downstream 992436 19731812 ~ 19755475 (+)
LOC103028233 maneal,LOC102777073 other downstream 1304326 20043702 ~ 20057320 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other downstream 1618173 20357549 ~ 20612284 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other downstream 2079551 20818927 ~ 20821390 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other downstream 2100599 20839975 ~ 20860936 (+)

Expression


Co-expression Network