rrp15 (rrp15)


Basic Information

Item Value
gene id rrp15
gene name rrp15
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18368771 ~ 18374278 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251797.3
CACCCGACCCGTTTAGAGGTTACTCCTCAGCTCAGGAAAGATGGCGGCCTTGgggaagagagcacatgtgttTGTGGAAGCGGAGAAAGATGAAGACGACCTTGTCCAATTTggagatgatgataatgatgaggaAGGAAGCGAAGGGGGATCAGATGGTGAAGAGAGTGCTGGAGAGGAGAATGCTTCTGTTGGTGAAAGTGGTGGTGAAGAGGCAGAGGACGAGGATGACCAGAATGGGGACGTGGAAGAAAACCCCAATgctggctgggcagaagccatGGCCAAAATTCTGGGGAAGAAAACGCCAGATGGCAAGCCCTGTATCTTGGTGAAGGACAAAAAAGTGGACAAACTCagtgagaagaagagaaaagagaggcttgaaaaaaagaaacagGCAGATAAAAAGAAAGCATGGGAGATGATGTGTCGGGTGAAGCCGGATGTAGTCCaggataaagaaagagagagaagtctGCAGAAAATTGCTACCAGGGGTGTGGTGCAGTTGTTCAATGCAGTGCGGAAACACCAGCAGAATATGGATGAAAAGATTAAGACAGTTGGCGGCTCTGAAAGGAAAAAGGCAAAGATCATCTCTTCAGTATCAAAAAAGGACTTTATTGATATACTGCGAGGGACTGCTGGGGCCGTCGTACCAACTGTTAAAAAAGAACAACCTGCGCCTGAAGAGCCGAAGGATGAGAAGCCGTCATGGAGTGTCTTGAGGGACGATTTCATGATGGGTGCGTCTATGAAGGATTGGGACAAGGCTAGCGATGCAGAGCAAGAAGAAGACGGGTCAGGGGCTGGAGAGGACCTCAACAGTGACTCTGACTGAGCCTAGCCCCAGTCTTGTTCATGTAGTGCGCACattataactgtattttttgtgtgtctcTAATGAGAGAAGTGGATGGAGCCGAGTCTGTTGACCCTTCTTTCCGGCAAAAGATTGTCAACCAGAGTTCTGTATGTTGGGCTGTGACTGATACTGGATGGAACTGAACACAGGGATTGGACGCTGTTTCTGGACACAGTGAAcctggtttctctctctctcttttttttttttttttatggattgTTTCATCATCCGAGAGAACTCCATAAAATTGCTGGTAAGCAAGGTTGTGCCTAAGCATTGTATATagtgattttctttttcatcAGATCTTTATTCTGAAAATAAAGACACTTTATATAT

Function

symbol description
rrp15 Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to act upstream of or within rRNA processing. Predicted to be part of preribosome, large subunit precursor. Orthologous to human RRP15 (ribosomal RNA processing 15 homolog).

NR:

description
RRP15-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251797.3 True 1210 mRNA 0.46 5 18368771 18374278

Neighbor

gene id symbol gene type direction distance location
LOC111193340 NA coding upstream 7654 18358923 ~ 18361117 (+)
LOC103024770 NA coding upstream 13882 18354163 ~ 18354889 (+)
LOC111193341 NA coding upstream 16128 18351963 ~ 18352643 (+)
LOC111193302 NA coding upstream 18147 18348024 ~ 18350624 (+)
utp11 utp11 coding upstream 503696 17860580 ~ 17865075 (+)
tgfb2 tgfb2,LOC106584161,LOC106605021 coding downstream 7418 18381696 ~ 18416725 (+)
adcy3 adcy3,adcy3a,LOC107703925,LOC107688975 coding downstream 179344 18553622 ~ 18581597 (+)
LOC103027397 wdr26,LOC103027397,LOC108434195,LOC108270098,LOC105017621 coding downstream 208737 18583015 ~ 18594786 (+)
LOC107197682 abra coding downstream 427447 18801725 ~ 18808281 (+)
rbms3 rbms3,LOC108434201,LOC107668303,LOC107730162 coding downstream 501928 18876206 ~ 19150127 (+)
G91729 NA non-coding upstream 14223 18351934 ~ 18354548 (+)
G91723 NA non-coding upstream 43048 18325460 ~ 18325723 (+)
G91721 NA non-coding upstream 92374 18276156 ~ 18276397 (+)
G91708 NA non-coding upstream 278563 18060178 ~ 18090208 (+)
G91690 NA non-coding upstream 437021 17931475 ~ 17931750 (+)
G91836 NA non-coding downstream 353331 18727609 ~ 18727825 (+)
G91837 cenpw,LOC107668290,LOC107600551,LOC107666774 non-coding downstream 354429 18728707 ~ 18739376 (+)
G91853 hint3 non-coding downstream 436583 18810861 ~ 18813397 (+)
G91867 NA non-coding downstream 459170 18833448 ~ 18834103 (+)
G91881 NA non-coding downstream 634185 19008463 ~ 19009460 (+)
G91728 NA other upstream 7676 18348027 ~ 18361095 (+)
G91678 NA other upstream 456328 17911901 ~ 17912443 (+)
rcc1 NA other upstream 920838 17358839 ~ 17447933 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other upstream 1949391 16395214 ~ 16419380 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 3085716 15276142 ~ 15283055 (+)
G91748 NA other downstream 26210 18400488 ~ 18421263 (+)
G91760 NA other downstream 117402 18491680 ~ 18492072 (+)
lyplal1 lyplal1 other downstream 120081 18494359 ~ 18507035 (+)
LOC103028566 fez2 other downstream 229760 18604038 ~ 18613717 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other downstream 1357534 19731812 ~ 19755475 (+)

Expression


Co-expression Network