tgfb2 (tgfb2,LOC106584161,LOC106605021)


Basic Information

Item Value
gene id tgfb2
gene name tgfb2,LOC106584161,LOC106605021
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18381696 ~ 18416725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251800.3
gtgtgtgcgtgtgtgtgtcagtgcgCGCGGCGCTGCAGTATTTACACTGAGTCTCTGAGTGACCGGGGGCTGCATTAGTGCTGCGCTGTGAGCGGAATGACCACAACCTCAGCACGCTGACAAAGCGCGAGAGAGCACGTGGTGAGGCTCGTCCTGTATAAATCTCACTGCCGCTCGctctgctggtgtgtgtgtgtgtgtgagagagaaagagtgtgtgagtgacttTGAagggagtgagtgtgagtgcttGCGCAGCCGGCCTTCAGAGGAAGATGTGTGCCTAGTGGTGCTTTTCTGTTGGAGGCGATGGAGAGAGGATCGTGAGCGGCAGTGCGCGGTGAACGGACACTAACTGAAGAGGCGCTACGTCTTGTTGCTTGTTGCGGGCCTCTATATctctatttatctttttttttgcgaAACAgtggatagtgtgtgtgtaagtgtgtgtttgttgagtTGAGTGCCTTGGCGTGGGTGGGTGTTTATGTGCGTAAAagtgcgcgcgcgtgtgtgtttgtgtgtatgtacgcGCGAGTGCGCGAGATGCCCTGAGAGGCGGCGTAAAATCGCGTGTAACTTTTGAGGGTTCGTGGGCGCGAGCGCGGTGCCTGGGATGAGCGGATTTCTTCATCACTCTTGTCATCAACGTCATTATCATCATCTGCATCACCAGCAGCATCCTCAGTCTCATCATCACTgttatcttcatcatcatcttcaacataaccatcatcatcatcatcatcagtatcCGAGCCCTCTCCGCGCGCACACTGGATCCCAGTGGAATCTGCGGAACGTTCCAGGCGTTCCTTTCCGTTCCCCCCAATAAGCCTCGGGTGTAGCCCCCTAAACTACAGCTATACAGCCCATCTACACTGTTCCAGCGCGCGCACAGATGCGTGCAGTCTCCGGTCTCCCGTCCGCAGCGCGCGCATCCCACCTCCTCTAACCCTCGCTACCTTCTTGCCAATCTTCTCCGggactcatcttttttttttttttgctggactGTTGAAAACTGTCTAGGCCGGTGCGCGTTGTTGGATACGGGGAACGGGGAAAGCGCGCGAGGAGGCAGAAAGACGTGTTCGGACCCCCAACCCCGCCATGAACGTCTACGTGCTCACCCTGCTGCTCGCGCTGGAGCTGGCGCCCGCGGCGCGCGGCCTCTCCACGTGCAGCACGCTCGACATGGACCAGTTCATGAAGAAGCGCATCGAGGCCATCCGAGGGCAGATCCTCAGCAAGCTCAAGCTCACCAGCCCGCCCGAGGAGTACCCGGAGCCCGAGGACGTGTCCCGGGACATCATCGCCATCTACAACAGCACGCGCGACCTGCTGCAGGAGAAAGCCAACGAGCGCGCCGCCACGTGCGAGCGCCAGCGCAGCGAGGAGGAGTACTACGCCAAGGAGGTGCACAAGATCGACATGCACCGCTTCGACCCAAACGGGAATTCCATCCCTCCGAACCACTACAACCCTTACTTCAGAAGGCTCAGGTTTGATGTGAGCCCCATGGAGAAGAACGCCTCCAACCTGGTGAAAGCTGAGCTGAGGATCTTCAGGCTGCAGAACCCCAAGGCCCGTGTGCCTGAGCAGCGCGTTGAGCTTTATCAGATCCTGGCCCACAAGGACCTGACTTCGCCCACACAGCGCTACATCGACAGCAAGGTGGTGCGGACCAACACGGAGGGCGAGTGGCTGTCGTTTGATGTGACGGAGGCGGTCAGCGAATGGCTTCTACACAGagACAGAAACAGTGGATTCAAGATCAGCCTGCACTGTCCCTGCTGTACGTTTGTGCCGTCAAATAATTACATCATCCCAAACAAGAGCGAGGAGTTGGAGGCCCGCTTTGCAGGGATTGATGATAGCATCTCTGGTGTAGGTAAAAAGCGTCGCCCGCACTTGTTGCTCATGCTGCTTCCTTCCTACCGCCTGGAGTCCCAGCACAAGAGCCACAGACAGAAACGAGCTTTGGATGCTGCTTTCTGCTCCAGGAATGTCCAGGACAACTGCTGCCTGCGCTCGCTCTACATCGATTTCAAGAGGGACCTGGGATGGAGGTGGATCCATGAGCCAAAAGGCTACAATGCCAACTTCTGTGCCGGAGCATGTCCTTATCTCTGGAGTGCAGACACTCAACATAGCAAGgTCCTTGGTCTATATAACACCATAAATCCAGAAGCGTCGGCCTCTCCATGCTGTGTATCCCAAGACTTGGAGCCTCTTACTATCCTTTACTTCATTGGCAAGACTCCCAAAATTGAGCAGCTTTCCAACATGATCGTCAAGTCCTGCAAATGCAGCTAGGAACTGGCTACAGCTGCACAAagacatccacacacacaaacacacacacacacacacacacaca

Function

symbol description
tgfb2 Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within roof of mouth development and sclerotome development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including mandibular arch skeleton; mesoderm; otic placode; pericardial region; and periocular mesenchyme. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 4 and colorectal cancer. Orthologous to human TGFB2 (transforming growth factor beta 2).

NR:

description
transforming growth factor beta-2-like

GO: NA

KEGG:

id description
K13376 TGFB2; transforming growth factor beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251800.3 True 2386 mRNA 0.55 7 18381696 18416725

Neighbor

gene id symbol gene type direction distance location
rrp15 rrp15 coding upstream 7418 18368771 ~ 18374278 (+)
LOC111193340 NA coding upstream 20579 18358923 ~ 18361117 (+)
LOC103024770 NA coding upstream 26807 18354163 ~ 18354889 (+)
LOC111193341 NA coding upstream 29053 18351963 ~ 18352643 (+)
LOC111193302 NA coding upstream 31072 18348024 ~ 18350624 (+)
adcy3 adcy3,adcy3a,LOC107703925,LOC107688975 coding downstream 136897 18553622 ~ 18581597 (+)
LOC103027397 wdr26,LOC103027397,LOC108434195,LOC108270098,LOC105017621 coding downstream 166290 18583015 ~ 18594786 (+)
LOC107197682 abra coding downstream 385000 18801725 ~ 18808281 (+)
rbms3 rbms3,LOC108434201,LOC107668303,LOC107730162 coding downstream 459481 18876206 ~ 19150127 (+)
tgfbr2 tgfbr2,LOC107730143,LOC107600517,LOC107551196 coding downstream 779768 19196493 ~ 19232951 (+)
G91729 NA non-coding upstream 27148 18351934 ~ 18354548 (+)
G91723 NA non-coding upstream 55973 18325460 ~ 18325723 (+)
G91721 NA non-coding upstream 105299 18276156 ~ 18276397 (+)
G91708 NA non-coding upstream 291488 18060178 ~ 18090208 (+)
G91690 NA non-coding upstream 449946 17931475 ~ 17931750 (+)
G91836 NA non-coding downstream 310884 18727609 ~ 18727825 (+)
G91837 cenpw,LOC107668290,LOC107600551,LOC107666774 non-coding downstream 311982 18728707 ~ 18739376 (+)
G91853 hint3 non-coding downstream 394136 18810861 ~ 18813397 (+)
G91867 NA non-coding downstream 416723 18833448 ~ 18834103 (+)
G91881 NA non-coding downstream 591738 19008463 ~ 19009460 (+)
G91728 NA other upstream 20601 18348027 ~ 18361095 (+)
G91678 NA other upstream 469253 17911901 ~ 17912443 (+)
rcc1 NA other upstream 933763 17358839 ~ 17447933 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other upstream 1962316 16395214 ~ 16419380 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 3098641 15276142 ~ 15283055 (+)
G91760 NA other downstream 74955 18491680 ~ 18492072 (+)
lyplal1 lyplal1 other downstream 77634 18494359 ~ 18507035 (+)
LOC103028566 fez2 other downstream 187313 18604038 ~ 18613717 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other downstream 1315087 19731812 ~ 19755475 (+)
LOC103028233 maneal,LOC102777073 other downstream 1626977 20043702 ~ 20057320 (+)

Expression


Co-expression Network