RNA id: TU123241


Basic Information

Item Value
RNA id TU123241
length 1299
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G91621
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 17627288 ~ 17628669 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGAATTGAGCAGAAGTGAAATATGTTGTAATAATCTACATTGATTAATTAGTGCTGAGTGAACAGTGTACAGTCCTGTGTGTGATAAGGTGTACAAGTATTTTTCTTAAACTCTAATTCACGACACACCTTTACACCTACTCACCCAGCTTGCCATACTGCTCAACCAGGTCCATCTTAGAGAGCACATTGACATGAGGCAGTTCCACCTGGAGCATGGTGGACAGGGAGGTGCAGAGCACAGAAATGAACTTGGCTGGCTCAGCACAGTAATGGGAGTCCACCAGATGCACAGCTGACAACCTGAAATTCCACTTGGACAACTGGGCGAATATATTTCTGACAGAACTATGGTGGGTGTAGAGCTCCACCTGGCCTGGACAGTCGAAAAGGAAGTAGTAATCCTGATGCTCCTTAAACTTGCCTTCCAACCAGTCCAAATTAGCCTCCAGGTATTCCATACAGTAAATTAGGCCTCCATTAGGACCCAGTTTCAGACCGTCCATTACATCATCCAGGGTGACGAGCTCTGATATGTCCACTGCACATGTATAAGGCAGACCATCGTTTGCAGGGTCCATGTTTACTACTACGACCTTACGGCCCAGGTGGCTCAGGAACTCTTGCATTGCGCGGCAGTAGGTTGTTTTACCTGAGCCAGGAGGCCCAATAACCACCTGACCGAATCGCAGGGAGGGCTGCTTGGGTTGAGAAGACATGATCCAAGTTCTCCACTACACAAGAAAACATTAACCAACTGTCTATACAAATATAAGAGACTCCACAGAAAGTGTGCACTGCAATTCACTCACAGCTGATTCTACACGCCGTCTGGTTTAAAGCGTGAGACATTATAGCTACAGTTAGTAGAGAGCTAGATGCGATTTGTGTCGTTATATTAATGAGCTGGGCTTTTTAAACTAGCtaaactaactaacctagctaactacattACAACCTACACCCATATAACAACCAGCCTGCTTCCAAATAACAATTACAGGCGTTTAGAGTTTGAACCCAGAAATGcagacttttatttattataacaaataattatttaatacttaataattttaaaataatcaattcGAATAGCAAACCAACTAGCTAGCCTTAGGTAGCACTTGGTTAACTTAACTTACATAATAAAGAGTTACTTTATACCTCCTAAGCTAAAGCTTAAAAGGCAACTCGATCCTACcaaaatacaaactaaacattttaattaaaaatgttttaaattacacaaatatgagttgcactgaacagcaaaaaagcaCGAAATAACGATACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123205 lncRNA upstream 41091 17585501 ~ 17586197 (+) True G91599
TU123202 lncRNA upstream 51504 17574544 ~ 17575784 (+) True G91597
TU123121 lncRNA upstream 118310 17508750 ~ 17508978 (+) True G91547
TU123106 lncRNA upstream 141260 17485465 ~ 17486028 (+) True G91537
TU123102 lncRNA upstream 157043 17470031 ~ 17470245 (+) True G91534
TU123252 lncRNA downstream 28427 17657096 ~ 17659111 (+) True G91628
TU123257 lncRNA downstream 49196 17677865 ~ 17678205 (+) True G91633
XR_001518706.2 lncRNA downstream 284442 17913111 ~ 17925434 (+) True LOC107197683
TU123320 lncRNA downstream 302806 17931475 ~ 17931750 (+) True G91690
TU123338 lncRNA downstream 431509 18060178 ~ 18090208 (+) True G91708
XM_022673360.1 mRNA upstream 179357 17441118 ~ 17447931 (+) True rcc1
XM_022673689.1 mRNA upstream 189089 17400821 ~ 17438199 (+) False LOC103041872
XM_007251791.3 mRNA downstream 5516 17634185 ~ 17637610 (+) True dnali1
XM_007251793.3 mRNA downstream 79066 17707735 ~ 17753547 (+) True rspo1
XM_015606461.2 mRNA downstream 79066 17707735 ~ 17753547 (+) False rspo1
XM_022673708.1 mRNA downstream 231911 17860580 ~ 17865075 (+) True utp11
XM_007251797.3 mRNA downstream 740102 18368771 ~ 18374278 (+) True rrp15
XR_002650442.1 other upstream 1207908 16395214 ~ 16419380 (+) False trim71
TU122481 other upstream 2344233 15281509 ~ 15283055 (+) False LOC103025288
TU122479 other upstream 2348124 15276253 ~ 15279164 (+) False LOC103025288
TU122457 other upstream 2410780 15160215 ~ 15216508 (+) True alg14
TU122125 other upstream 3352590 14272064 ~ 14274698 (+) False eif1b
TU123306 other downstream 283232 17911901 ~ 17912443 (+) True G91678
LOC111193302 other downstream 719355 18348024 ~ 18350624 (+) True LOC111193302
TU123361 other downstream 719358 18348027 ~ 18361095 (+) True G91728
LOC111193341 other downstream 723294 18351963 ~ 18352643 (+) True LOC111193341
LOC103024770 other downstream 725494 18354163 ~ 18354889 (+) True LOC103024770

Expression Profile