RNA id: TU123338


Basic Information

Item Value
RNA id TU123338
length 241
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G91708
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18060178 ~ 18090208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagacgcagagcgttcagacctcaaataatgcaaagaaaacaagttcatactcataaagttttaagagttcataaatcaatatttggtggaataaccctgtttttaatcacagttttcatgcatcttggcatgttctcctccaccagtcttacacactgcttttagataactttatgccactcctggtgcaaaaaaaatcaagcagttcagcttggtttgatggcttgtgatcatccatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123320 lncRNA upstream 128428 17931475 ~ 17931750 (+) True G91690
XR_001518706.2 lncRNA upstream 134744 17913111 ~ 17925434 (+) True LOC107197683
TU123257 lncRNA upstream 381973 17677865 ~ 17678205 (+) True G91633
TU123252 lncRNA upstream 401067 17657096 ~ 17659111 (+) True G91628
TU123241 lncRNA upstream 431509 17627288 ~ 17628669 (+) True G91621
TU123353 lncRNA downstream 185948 18276156 ~ 18276397 (+) True G91721
TU123355 lncRNA downstream 235252 18325460 ~ 18325723 (+) True G91723
TU123363 lncRNA downstream 257819 18348027 ~ 18350465 (+) False G91728
TU123365 lncRNA downstream 261726 18351934 ~ 18354548 (+) True G91729
TU123417 lncRNA downstream 404173 18494381 ~ 18507035 (+) False lyplal1
XM_022673708.1 mRNA upstream 195103 17860580 ~ 17865075 (+) True utp11
XM_007251793.3 mRNA upstream 306631 17707735 ~ 17753547 (+) True rspo1
XM_015606461.2 mRNA upstream 306631 17707735 ~ 17753547 (+) False rspo1
XM_007251791.3 mRNA upstream 422568 17634185 ~ 17637610 (+) True dnali1
XM_022673360.1 mRNA upstream 612247 17441118 ~ 17447931 (+) True rcc1
XM_007251797.3 mRNA downstream 278563 18368771 ~ 18374278 (+) True rrp15
XM_007251800.3 mRNA downstream 291488 18381696 ~ 18416725 (+) True tgfb2
XM_007251801.3 mRNA downstream 404151 18494359 ~ 18500620 (+) True lyplal1
XM_022673713.1 mRNA downstream 463414 18553622 ~ 18581597 (+) False adcy3
XM_015606466.2 mRNA downstream 465333 18555541 ~ 18581597 (+) False adcy3
TU123306 other upstream 147735 17911901 ~ 17912443 (+) True G91678
XR_002650442.1 other upstream 1640798 16395214 ~ 16419380 (+) False trim71
TU122481 other upstream 2777123 15281509 ~ 15283055 (+) False LOC103025288
TU122479 other upstream 2781014 15276253 ~ 15279164 (+) False LOC103025288
TU122457 other upstream 2843670 15160215 ~ 15216508 (+) True alg14
LOC111193302 other downstream 257816 18348024 ~ 18350624 (+) True LOC111193302
TU123361 other downstream 257819 18348027 ~ 18361095 (+) True G91728
LOC111193341 other downstream 261755 18351963 ~ 18352643 (+) True LOC111193341
LOC103024770 other downstream 263955 18354163 ~ 18354889 (+) True LOC103024770
LOC111193340 other downstream 268715 18358923 ~ 18361117 (+) True LOC111193340

Expression Profile