RNA id: XM_007251791.3



Basic Information


Item Value
RNA id XM_007251791.3
length 947
RNA type mRNA
GC content 0.48
exon number 6
gene id dnali1
representative True

Chromosome Information


Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 17634185 ~ 17637610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


cggttgttgttttttctctcacacGGTCTCCAGGGTTGCCATAGTAAATGTAAACAGTTCTCATACTCACTTTCCTCTGAGCTGAAACGTtactgaaacttttttttttacttaaaattcaCTTTGTAAAAATGGAACCTCCccccgactctctgctgaagtaTGATACTCCGGCGCTGATCACACCGACCACAGACAACAAATCACCTAGGGCTAGACCTTTGAAAGTGAGTCCACAGCAGCTGGTTTTATCTGGGCCCGTCCCGCCTCCACCTAAACCCAAGTCTCCCCCTGCAGAAACTGAAGAGATACTCAATGCAATTCTGccaccaagGGAATGGAAAGAGAACAACACGCGCTGGATTCAGCAGGTGTCCAGCACTCCTGCCACACGGATGGATGTGGTTCACCTGCAGGAGCAGCTGGAGCTGAAACTGCAGCAGAGACAGGCCAGAGAAAAAGGCATCTGCCCAGTGCGCAGTGAGCTCTACTCACAGTGCTTTGATGAGTTAATCAGGCAGATTAGCATCAACTGTCCTGAGAGGGGGTTGCTACTTCTACGAGTGCGAGATGAGATACGTATGACCAACACAGTCTATCAGACCCTGCATGCTAGCGGTATGACCTTTGGCATAAAGAAGGCCCTACAGGCTGAGCAAGAGCCTTCAGGCAAGCAGAGAATTGCAGACTTAGAGAACAAGAATAAGGATCTGGAAAGGCAGGTAAATGAGCAGAAGGCTAAATGTGAAGAAATCGAGAGGCAAGAAGCTGAGCGGCGACAGGTTGAAGAGAAACAGCACACGGCACAGGTCCAGCTTCTCAAGCGCACCAACCAGCAACTAAAGgcccATCTGGAAGAAATCATCACccccaaaaaaggaaaatcatcAGCAATCAGCGAATAATCATATTTGATCCCagcatattaataaagtttgaCATGTACA

Function


GO: NA

KEGG:

id description
K10410 DNALI; dynein light intermediate chain, axonemal

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123241 lncRNA upstream 5516 17627288 ~ 17628669 (+) True G91621
TU123205 lncRNA upstream 47988 17585501 ~ 17586197 (+) True G91599
TU123202 lncRNA upstream 58401 17574544 ~ 17575784 (+) True G91597
TU123121 lncRNA upstream 125207 17508750 ~ 17508978 (+) True G91547
TU123106 lncRNA upstream 148157 17485465 ~ 17486028 (+) True G91537
TU123252 lncRNA downstream 19486 17657096 ~ 17659111 (+) True G91628
TU123257 lncRNA downstream 40255 17677865 ~ 17678205 (+) True G91633
XR_001518706.2 lncRNA downstream 275501 17913111 ~ 17925434 (+) True LOC107197683
TU123320 lncRNA downstream 293865 17931475 ~ 17931750 (+) True G91690
TU123338 lncRNA downstream 422568 18060178 ~ 18090208 (+) True G91708
XM_022673360.1 mRNA upstream 186254 17441118 ~ 17447931 (+) True rcc1
XM_022673687.1 mRNA upstream 195986 17400820 ~ 17438199 (+) False LOC103041872
XM_007251793.3 mRNA downstream 70125 17707735 ~ 17753547 (+) True rspo1
XM_015606461.2 mRNA downstream 70125 17707735 ~ 17753547 (+) False rspo1
XM_022673708.1 mRNA downstream 222970 17860580 ~ 17865075 (+) True utp11
XM_007251797.3 mRNA downstream 731161 18368771 ~ 18374278 (+) True rrp15
XM_007251800.3 mRNA downstream 744086 18381696 ~ 18416725 (+) True tgfb2
XR_002650442.1 other upstream 1214805 16395214 ~ 16419380 (+) False trim71
TU122481 other upstream 2351130 15281509 ~ 15283055 (+) False LOC103025288
TU122479 other upstream 2355021 15276253 ~ 15279164 (+) False LOC103025288
TU122457 other upstream 2417677 15160215 ~ 15216508 (+) True alg14
TU122125 other upstream 3359487 14272064 ~ 14274698 (+) False eif1b
TU123306 other downstream 274291 17911901 ~ 17912443 (+) True G91678
LOC111193302 other downstream 710414 18348024 ~ 18350624 (+) True LOC111193302
TU123361 other downstream 710417 18348027 ~ 18361095 (+) True G91728
LOC111193341 other downstream 714353 18351963 ~ 18352643 (+) True LOC111193341
LOC103024770 other downstream 716553 18354163 ~ 18354889 (+) True LOC103024770

Expression Profile