Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC111193341 |
| length | 527 |
| RNA type | V_segment |
| GC content | 0.46 |
| exon number | 2 |
| gene id | LOC111193341 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035906.1 |
| NCBI id | CM008309.1 |
| chromosome length | 35377769 |
| location | 18351963 ~ 18352643 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0016064 | immunoglobulin mediated immune response | biological_process |
| GO:0002250 | adaptive immune response | biological_process |
| GO:0002252 | immune effector process | biological_process |
| GO:0002253 | activation of immune response | biological_process |
| GO:0072376 | protein activation cascade | biological_process |
| GO:0006956 | complement activation | biological_process |
| GO:0006958 | complement activation, classical pathway | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:0048583 | regulation of response to stimulus | biological_process |
| GO:0002376 | immune system process | biological_process |
| GO:0002682 | regulation of immune system process | biological_process |
| GO:0002684 | positive regulation of immune system process | biological_process |
| GO:0050776 | regulation of immune response | biological_process |
| GO:0050778 | positive regulation of immune response | biological_process |
| GO:0002443 | leukocyte mediated immunity | biological_process |
| GO:0002449 | lymphocyte mediated immunity | biological_process |
| GO:0002455 | humoral immune response mediated by circulating immunoglobulin | biological_process |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | biological_process |
| GO:0019724 | B cell mediated immunity | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU123363 | lncRNA | upstream | 1498 | 18348027 ~ 18350465 (+) | False | G91728 |
| TU123355 | lncRNA | upstream | 26240 | 18325460 ~ 18325723 (+) | True | G91723 |
| TU123353 | lncRNA | upstream | 75566 | 18276156 ~ 18276397 (+) | True | G91721 |
| TU123338 | lncRNA | upstream | 261755 | 18060178 ~ 18090208 (+) | True | G91708 |
| TU123320 | lncRNA | upstream | 420213 | 17931475 ~ 17931750 (+) | True | G91690 |
| TU123417 | lncRNA | downstream | 141738 | 18494381 ~ 18507035 (+) | False | lyplal1 |
| TU123507 | lncRNA | downstream | 374966 | 18727609 ~ 18727825 (+) | True | G91836 |
| TU123508 | lncRNA | downstream | 376064 | 18728707 ~ 18739376 (+) | True | G91837 |
| TU123531 | lncRNA | downstream | 458218 | 18810861 ~ 18813397 (+) | True | G91853 |
| TU123548 | lncRNA | downstream | 480805 | 18833448 ~ 18834103 (+) | True | G91867 |
| XM_022673708.1 | mRNA | upstream | 486888 | 17860580 ~ 17865075 (+) | True | utp11 |
| XM_007251793.3 | mRNA | upstream | 598416 | 17707735 ~ 17753547 (+) | True | rspo1 |
| XM_015606461.2 | mRNA | upstream | 598416 | 17707735 ~ 17753547 (+) | False | rspo1 |
| XM_007251791.3 | mRNA | upstream | 714353 | 17634185 ~ 17637610 (+) | True | dnali1 |
| XM_022673360.1 | mRNA | upstream | 904032 | 17441118 ~ 17447931 (+) | True | rcc1 |
| XM_007251797.3 | mRNA | downstream | 16128 | 18368771 ~ 18374278 (+) | True | rrp15 |
| XM_007251800.3 | mRNA | downstream | 29053 | 18381696 ~ 18416725 (+) | True | tgfb2 |
| XM_007251801.3 | mRNA | downstream | 141716 | 18494359 ~ 18500620 (+) | True | lyplal1 |
| XM_022673713.1 | mRNA | downstream | 200979 | 18553622 ~ 18581597 (+) | False | adcy3 |
| XM_015606466.2 | mRNA | downstream | 202898 | 18555541 ~ 18581597 (+) | False | adcy3 |
| LOC111193302 | other | upstream | 1339 | 18348024 ~ 18350624 (+) | True | LOC111193302 |
| TU123306 | other | upstream | 439520 | 17911901 ~ 17912443 (+) | True | G91678 |
| XR_002650442.1 | other | upstream | 1932583 | 16395214 ~ 16419380 (+) | False | trim71 |
| TU122481 | other | upstream | 3068908 | 15281509 ~ 15283055 (+) | False | LOC103025288 |
| TU122479 | other | upstream | 3072799 | 15276253 ~ 15279164 (+) | False | LOC103025288 |
| LOC103024770 | other | downstream | 1520 | 18354163 ~ 18354889 (+) | True | LOC103024770 |
| LOC111193340 | other | downstream | 6280 | 18358923 ~ 18361117 (+) | True | LOC111193340 |
| TU123393 | other | downstream | 47845 | 18400488 ~ 18421263 (+) | True | G91748 |
| TU123391 | other | downstream | 64966 | 18417609 ~ 18421263 (+) | False | G91748 |
| TU123412 | other | downstream | 139037 | 18491680 ~ 18492072 (+) | True | G91760 |
