RNA id: TU123507


Basic Information

Item Value
RNA id TU123507
length 217
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G91836
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18727609 ~ 18727825 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAACATTCAATATGTAATTACTTGCTGTACATTGTGGTAAAGGGTATTTccttaagtaaataataaaaaattaaggcTTCACACAATATATGACCCACCCTAGCCTCAAAACCCAGCAGACAAACAATATAAACCTATATAAACTGTTCAAATTTTCAAAAGttcaaatgtataaatgtacaaatgtctattttaagcacaGATTTGCAATACAac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123417 lncRNA upstream 220574 18494381 ~ 18507035 (+) False lyplal1
TU123365 lncRNA upstream 373061 18351934 ~ 18354548 (+) True G91729
TU123363 lncRNA upstream 377144 18348027 ~ 18350465 (+) False G91728
TU123355 lncRNA upstream 401886 18325460 ~ 18325723 (+) True G91723
TU123353 lncRNA upstream 451212 18276156 ~ 18276397 (+) True G91721
TU123508 lncRNA downstream 882 18728707 ~ 18739376 (+) True G91837
TU123531 lncRNA downstream 83036 18810861 ~ 18813397 (+) True G91853
TU123548 lncRNA downstream 105623 18833448 ~ 18834103 (+) True G91867
TU123565 lncRNA downstream 280638 19008463 ~ 19009460 (+) True G91881
TU123570 lncRNA downstream 344852 19072677 ~ 19141957 (+) True G91884
XM_022673716.1 mRNA upstream 113892 18604038 ~ 18613717 (+) True LOC103028566
XM_022673714.1 mRNA upstream 113892 18604041 ~ 18613717 (+) False LOC103028566
XM_007251809.3 mRNA upstream 113892 18604047 ~ 18613717 (+) False LOC103028566
XM_007251805.3 mRNA upstream 132823 18583015 ~ 18594786 (+) True LOC103027397
XM_007251806.3 mRNA upstream 132823 18583019 ~ 18594786 (+) False LOC103027397
XM_015606459.2 mRNA downstream 73900 18801725 ~ 18808281 (+) True LOC107197682
XM_022673722.1 mRNA downstream 148381 18876206 ~ 19150127 (+) False rbms3
XM_007251818.3 mRNA downstream 195288 18923113 ~ 19150127 (+) False rbms3
XM_007251817.3 mRNA downstream 195290 18923115 ~ 19150127 (+) True rbms3
XM_022673720.1 mRNA downstream 195290 18923115 ~ 19150127 (+) False rbms3
XR_002650449.1 other upstream 113892 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 235537 18491680 ~ 18492072 (+) True G91760
TU123393 other upstream 306346 18400488 ~ 18421263 (+) True G91748
TU123391 other upstream 306346 18417609 ~ 18421263 (+) False G91748
LOC111193340 other upstream 366492 18358923 ~ 18361117 (+) True LOC111193340
TU124129 other downstream 2091325 20819150 ~ 20821390 (+) False LOC103032252
TU124179 other downstream 2213601 20941426 ~ 20945506 (+) True G92350
TU124348 other downstream 2541340 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 2547338 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 2547338 21275163 ~ 21352003 (+) False G92462

Expression Profile