RNA id: XM_022673720.1


Basic Information

Item Value
RNA id XM_022673720.1
length 8433
RNA type mRNA
GC content 0.43
exon number 14
gene id rbms3
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18876206 ~ 19150127 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacatactctcatatacacacactcgctctcgcacgcagccacacacacacactcactcacaatcGCATATTCGCACGGGTGAGCGAGGAAGGAGGCGAGAGGAGGCCGTGGGAAAAGAAGAAGACATCAGCCGGGCAGACGCTGGGAGAAGAAGGAGTGTGCGTTTGTGTGCTCTTTGTGTGTTGCTCTGGGATAAGTGCCGGATTTTCCCCTTTTTCAGgagtttgctctgttttttccTCAGCGTTTCCAAAGCCGGACTGGAGCTGAGAAGGGTTTGGtctcactgactgactgtgtCTCAAGAGTGCATTCACATCTTCCTCCGTATCCCTTCTTTGTGCGCGACAGCCAGAACAGTGCAAGCGGAGCACGCAGCCGAGCAGagcgcctgtgtgtgtgtctatatgtgTGCCTGGGATATCTGACAGCTTCCTGCAGGATCTGACACTGCACAGACGGGCGAGAGAGCCAGGGacagaggaacagagagagaaagggaagcgGACACAGAGCGGGAGACAAAGTCAAGGCATGAGCTGGAGAATAGCGACAGCCAGCTTTTCGTAGAAATCTTTGCTGAAAAAAGCCCCCCTATACTtcccctcctccttcttctccttctcctttacctcctccttcttctctttCCTTCATCGCCTCCTTTTTATTCCCTCCTGTACCACTGCTCCTTTTCCTgctttccgtttttttttctttttgcagctgTCCCGTTCACTTTCCACCTTCTACATCAGCTCCTCTTCTTTCTCCGTACGAGAAGATTGGAAGAGTGCAACTCCTACACACTCCAGTGACAGACAGAAGAAGGACAGCCAGAGGTCCTGTGACACTCccaatcactctctctctctgtgtttccctttctcttcctctcattctctccctctttttctttatctttctctctcttttttttcaaaccAATCTCCATCCTCTGTTTGCTGCCTCTTTTTTGCCTGCACGGATTGCACCTCTGGTCCAGGAAGCAGTCAGCAGGGGTGGGGGGCAATTTGgagttgttctttttttttcccaccgTCGGTCCCGACCCAAGCACGCGAGTATCTGTACCCTGCCACGGTCAGAAGGATTCCAGCTACATGGGCAAACGTTTGGAACAGCAACCAATGTACCCCCAGTACACCTACTACTACCCTCACTATCTCCAGACTAAGCAGTCTTATGCCCCACCCCCTCCTCCCATGGCTCCGCCCAGCCCCagcaccaacagcagcagccacAGTGCAGCGGAGCAGCTCAGCAAAACCAACCTGTACATCCGAGGCCTGCCTCCTGGCACCACAGACCAGGACCTCATCAAACTCTGCCAACcGTACGGGAAAATAGTGTCAACAAAGGCGATCCTCGACAAAAACACCAACCAGTGCAAAGgcTATGGCTTTGTGGATTTCGACAGTCCTGCAGCAGCTCAGAAAGCGGTATCCTCTCTCAAGGCCAGTGGAGTGCAGGCCCAGATGGCCAAGCAACAAGAACAGGACCCCACTAACCTGTACATCTCCAACCTGCCTGTGTCTATGGATGAGCAGGAGCTGGAGAACATGCTGAAGCCTTTCGGACACGTCATCTCCACACGGATACTGCGAGACGCCAGCGGAGTCAGCCGAGGAGTCGGTTTTGCCAGgatGGAGTCCACTGAGAAATGTGATGTGGTGATTCAGCATTTCAATGGCAAGTTTCTCAAAACCCCGCCAGGAGTGCCAGCCCCCACGGAGCCACTGCTGTGTAAGTTTGCGGACGGAGGACAGAAGAAGCGGCAGAATCAGACCAAGTATCCCCAGAACGGCAGGCCGTGGCCACGGGAAGGAGAGAGCGGAATGGCACTGCCCTACGACCCTGCTGCAATGCAGAACGGGTTTTACTCCTCACCATACAGCATCTCCACCAACCGCATGATCGCCCAGACATCAATCACACCATTCATCGCTGCCTCGCCTGTCTCTACGTATCAGGTGCAGAGTACGTCCTGGATGCCTCACCAACAGTACGTTATGCAACCTGGTGCTGTGATCACGCCAGCCATGGACCACACCATCTCCATGCAGCAAGCCAACATGATGGGGCCCCTCACCCAGCAGATGAACCATCTGTCCCTCGGCACCACTGGCACTTACATGACTGCGGCGGCTGCTGCAGCTCCTATGCAGGGAACCTACATTCCCCAGTACACTGCGGTGCCTGCCTCAGCCGTCTCAGTGGAGGGTGTGGTGACTGAGGCGTCTCCACAGAGCGTCCCTCCCTCTTCCCAGGATGCCAGTGGACAGCAGCAGCCTCTGTGTGTGGACGGCTCCAACGATCACGCACCCACCTACTCCTACCAGCCTGCTAAATaacggaggaggaggagggggtgtTTGGGTGACTGCGTTGCCTTGAGATTGGGGGACTGTGCTGGGGACGAGGAGGACGAAAGGAAAAGCTGAACAGAAAACGTTTGTGTCCGCCTTTGCAcaagcaccaaaaaaaaaaaaaagaagatggagACGGAGGAGAAGACTATATCAGACACCTGGATGAAGTGGGAGGAGCCTTTAAAAGCCACCATCATggtttaaaaagagaaagatatgCAGTCCTGGAGTTTGAGCTAAATGGCTAAATCTACAACTTTACAAAACGTTTCCTTCATGAAGTGATGAAATTCAAACAAGTACAAAGTTTTCCAGTTATTTTCTGAATGTGCAGGTAGGTTTTCAGCTACAGTGAGTTTTCTATTAGACGAGGAAGCATGTTtctgtgagagagggagagagaaagaatgaaagagtgaaaaaaagTCTTCCTCAGATTCTAAGCTActtttacttttcattttttatgagTTAGATTTTAGTTTTCTAGAGAATATCAATGTTTTATCATCTTTGTTGCCTTAATTTTGAGAAGCGTCCAAGACTTTTCCCAGTCGAACGtcttgaaaagaaaaaatggaaaaaaaaaaactacaaaaaaaaaaacaccaacaacaAACTGTCTGAATGGACTAATGGAGGGATGCGAGGCCTGGGGCGGAGTAGCACCCTGTAATAGTACCTGTacagaggagtgagagaggtcTTGTGAAGACGTTTTAAATTATCCGTGGCGACTTTGTGTTAAAAGAGAGGACAGTCAAATTATAGTGATGTGTTTAAAGAGAGTTgcatttttttagaaaaaaaaagaaaaatgttaacCACTGCATCCTGGGAAATGCAGTTTATTGTGTAGTGCAGATCATTTTTAATGgcattattgtttttatctgcaatattttttatgaGCTTTAAGGTGTTTTCAGCCTGCTTTGCTTGTTTCattgccagaaaaaaaaaatacaaaaaatacaaaaaactaggaaaaaaaatatattggcaGCGCAAAAGTACGTAGATAGGAGcttttgaattaaaaataaagaaaaatgtgtgCAAAAAGCAATAGTAATAGGAAATTGTTGACAATTTCTTTAGTCTTTCTTAGCTGTGGATCAAATGCAGCCCATGGATGGCATATTTTATACCAAAGATGAAGAAACCCCGTAGAGACAGTGGAGTAGATCGATTTCTTTTCTATCTGATATTTTTTGGCCTTGTTGTTGTAGTCTCTGTGTCTCTGACGTATTGGTTTGACCTTGATGGCCAAACTGGTACTTTCAACTTTCAATGGGTGGGGGGGTGGGATGGAGGGTAGCTGTGGGTTTCTTCCACTTCCTTCCACTGCTGCAGCTTTTTCTGCCAATCATTCTGAACTCAGACTCGGATGCAGAGTGATGGTGTGTGTTGCGTGTTGAGTGTGGCATCTCCCCAGCAGATGGCATCAGAGAAGCTGCAGAAGGAGGACCCTGTTTCCTCTCAGCTCAGCATGTGGACACTGTATATCTCTGTCACGGCAGCACCGGCTCACTGACTCAAGCGCTTTCAGTCTTGTTTATTGTGCACGGGTGCATCGTCATCATCAAGGAAATCTTCTACATACCCAGTGTGGCTAACACGTCATACGCAGACTTTACCAAAGTAGGACAGGCTCACTTGTGTGTATTTAAACTCTCTGCAGTTAGCTACCTCAATTTAACGCTGTTCCACCGTGAGGAAACCATATAATGAAGAGGTTAGGAATTTCCAACTGCTTTCAACTACCTGAGAGATGAATTTCAGCTTTGCTTTGGCGcagatggggaaaaaaataaataatttgctCTTGTGTGCTAGAATATACAGTTTGTGCAGTAGGTGATGCCATGATGCAAGAGTCCCACTTTAAACTCTTTGGGGTTGACAAACACGACAACAATTTAATTTGGATGTTTCTCAATGTttcagattatatttttgtgataatataTGCCATGCCGTGTCCAATTGGTAGATCTGTAATTTGTGGATACTTGcatctctttcatttttttacattacatttggcagatgttTGCCTATGTTTTGTATGAAATTGACCAGTGGACACATTTAGGAAATCTCTAAGGACTAAGGACAGTGCTGTGCTGGAATGCTCATTAAAAGCATGTATAACACATGGCTGATTTGTAAAGACGCTATCGCTGTATCATATTCGGGTTCTATGCTGAAGATCTGCCCGACTAAGCATAAAGATCTGTTGGACAAATGATATTAAGTAATATTAAACCCTATCCGGacaagattagtttctcagggggacaacTGTGAAAGATATTTCACACTTGTACttagttttttggctttctctgtcacatgacatcgcgttcagtagctcccccatttccactcactgttgtgtttatgtggaccTCCGTGGAAatgcgcgcccaaagtgtaattaaggtgtgtggcagtggaaaAAAGCTAATTTGTTAAACACGAGATGACGAAAATCAAAGATGTGagtctggacaggactaaaatttcCTGACAATCGTGGAATTAATGTTCTGAGAGGACGTCTGAgataaacacatacatgttcgttttggacagaaataaaatcacagagaaccCCCCAGGAGCCCCTGAGAAACGAACCCCGCCTGTATAGGGCTTTAGTCAGCTAAACATTATAAtggaataattaaaaatatgatttaaaactaAATTGAAACTGGTAAACTTGTTAATCACTTAAAATCatgagttttctttaaaaaaaaaaaaaacatttaattggcTGTTCGGGTGCAATTTACATCAAGTACAAATTATTCCACAATTACACAATGTTAACTAAGTCTTTAGTAATTTCCTAACTGGCCATTGGTCACTTCTACAAAAATGGACACAGATGGACACAGAAATCCACCAGTTAGACACAACAGGAGGAAGAAAATGAGTTTCTTAACTGTGCCGTATTATtggtaatatattattaatcgAGAAACAATGACTTGACTAGCTATTCTTCAACCCCAGTGGGTTCATTATACCACTATAAACCATTTTGAAATCTGGCAAAAATCCCACTGCTAGCAAAATCATAAATTCACTGTGTGGAAGTGGTGAGAAACAGCTATGTATCATAGTGGAAACAGGTGGTTACTCCAGTCTAGTGCCTTGTTACAAAGCAATGAAGAGCTAAATCTGTAAACCAGAGAAAGACATACTTGACATTCCCGTAGATTTAGGCTATATGCCATCCTTAATGCTCTCACATCAGCTTTGCAAATTAGTTAATCTTCATATGAGAATAAAGTAAAGGCTTGGTTAGTGGATGTTAGTCTTGATTTCATGTTGAATAGGACGGCATGATTTGATCACTCTAACTCACATGTGCTCTACAAGGAGTTTAAATACACATAGTGACATGTAGGTGGACGTTCTTATTGTGCTACATCAACACATTCCTTCATTCACAGCTTCTTTCACggttagtgttatttccaaggTTCTTCTAAAGTAACTTTCTTTGGAGGAGTGATATCCTTATAcgtctttttcctcttttctgaACTGTAGGAAGCTATTTCTCTTCTACACATCGTATGATCAGAGttttgttggttggtttgttgatgcacgttgttttttttttttttttaagctcatCTCTCATTGTCTCTTTACAGAGGGGATCTCTGGGTGCTAAACCGTTCTGCTCCTTAGCAGGCATGCTCTGGGTAACATGGTGATGAGTCAGCTATTAGAGGTCAACAGCAGAGGTTAACAGCTATGCTGGTTGACTTGTAGTGacaagtgtctttttttttatatctgcgATTCAAAGTTGAGACTGCCATCATGGTAGGATCTATGAAGACAGTTTCTCAGTAGCCTACTGGTCACAGAAATGGTCTAAAGAGTCTAAAGAGGCCTCGTGGTGAGtgtgaaggatacatcagctgcgtcctcAAAATCACTCCCAACATTTCTAGGCTACTTATGAAGGATTCCTCAGTTTGGAAAAGCCTTCAGTGAGGTAGCGGCCAAGAAACATAGCCCACCTCTGCTGCAGTCTTGGCTTTGGAACGCAGCTTGTGTGTTCTCCCCTTTCTGATGTTGCTAAAGCTAGCTGCTAGCTGCTGATTGAGATTGAGACAATGCAGTACCGTAGAGAGAAATACCAtcaaaaaatattgccattgAGTGATCTGAATAAAGTATGTTGTATTTGGGGTTGGGCTGTGGGCCTTGGGGTTGGGCTGTGGGCcttggggtggggggtggggacTGTGGGGAATGTGGGAGCTTCTTTTTGAGGGGTGATGAATATGAGAATCCTTTTTACCATGCGTCTCGACCAGGATAATATGTCGGCTACATTGTAACGCCTCATCAGTGAGAGTCAAGAATACACTAAACATAGCTCTGATACAATGTGGAGGCCACACTACAGCTACAcgtttttacacatttcttggataattaagatattttaaaaaaggaaacttGGTCTTTAGCTAAAGATTTtgattcttttcatttttttttctactgccTTTCTGGAGAGTTCATTTTATCATGTAATTGCTGCTATCAAGCATTCAGTATTGGAGGGCCAGAGTGGCACATGGAAAGAGATTACATGCTACATACTGCTGCTTAATCAACAACCATAAGGAACATAAGGTTTTAGGAAGTGTGCAGCAGCTTTTACAGCACACGTATCAGAGAACAATTGTATGTAATGAAGGGTTCTAAAGGGCCCGAAAGCCCCTTTTAAGGCTCATTTATGCTCACTTTACGCTCAAAAATGAAtatgtctgttttaaatgttggaGCCATCACTGTGTCTTTTACTTTGGAATGGATGATAAACAGTACTGTATGTTCACTACAGGGCAGTTCAGAgtcaaaagatttttttttctacaagaAAGCTATTGACTCCAGTGATACTGCTCCATTCAGTCGGGATTTTAATGCTTTCAGGCAACATGCGGATACAGGTTAAATCAAAGGCTTTGTCCATatctgtaatgttttttttttttaccagagtaTTTTCTTTGTAGTGTTTATGTGGCAGTGGCCATGTTGGAACTCTTGGGTCCACTGCCCCAACAATTTCCAATGGTACTGCTTCATTCCATCCATATCCATATCCAGTGATATTCCAGAGAACATGCACAAATACGgaagaaataaaagcaaagtaCAGACCAATAAATGACTCTGTCCCAATCCATAATAAACACTGAGCATAAATGAGTCTTTAAACATGGCACATATGTAGGGAGCTGCTCGAACCTGTGCAAACGCACTTCTCATTCTGCCGTACTGCCGCCTGCAGTTAGTGTACTGTACTCTTCGGTTCCTAATGGGGTtcccacactgtaaaacccaacAATCAGCCAACTTAAATAAttcacacacttctacacagcTCCGAAGGACGTCTTATTCTTAGAGCTAACGATTTCCAATAATCGTTTGTTTGAGAAAGCTCATTGCTGGCTTTTGCAGTGCTCTTGCTGATGAAGCCTGCTCCTCTTTTGTAACACTGCACATTTCATTGGACGTTAGGATGGAGTCTCACATTGTGTCTTCAGATCTGTTCGACTGTCACAGATAATCACGTAGTAAGAATGTGTTCATTGACCTATCAAAGACCTCCGGCTTTAGCAATGGGAGGGTCATGTAGTGTCagcatgggaaaaaaaagtaaaaaagaagaaaatcacGTTCTACCAAATTCAGCCAAAACAGCAAAACCTCTATAAGAAATTAACTTATTGACAGAGGAAATAGAAgactatttataaaaaaaaatctttttatttgtacAAGTGTTGTTGAAAGGATTACGAAAGTGAAAACAGTTCTAggatgctattttttttttatttgctgcacATTCATGCCTCCCGTGTGTTTGAGTCGTGATCCTGAGAGTTTCTGTAAATCAGTGGATGTCGAGTTTAaacttctgttttattattttactttcaatGAAGCTTTCAATAAAAAAGGTCAAAAATAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123548 lncRNA upstream 89012 18833448 ~ 18834103 (+) True G91867
TU123531 lncRNA upstream 109718 18810861 ~ 18813397 (+) True G91853
TU123508 lncRNA upstream 183739 18728707 ~ 18739376 (+) True G91837
TU123507 lncRNA upstream 195290 18727609 ~ 18727825 (+) True G91836
TU123417 lncRNA upstream 416080 18494381 ~ 18507035 (+) False lyplal1
TU123591 lncRNA downstream 111974 19262101 ~ 19267604 (+) True LOC111193344
TU123592 lncRNA downstream 111974 19262101 ~ 19267604 (+) False LOC111193344
XR_002650453.1 lncRNA downstream 112186 19262313 ~ 19267427 (+) False LOC111193344
XR_002650455.1 lncRNA downstream 112186 19262313 ~ 19267427 (+) False LOC111193344
XR_002650454.1 lncRNA downstream 112574 19262701 ~ 19267427 (+) False LOC111193344
XM_015606459.2 mRNA upstream 114834 18801725 ~ 18808281 (+) True LOC107197682
XM_022673716.1 mRNA upstream 309398 18604038 ~ 18613717 (+) True LOC103028566
XM_022673714.1 mRNA upstream 309398 18604041 ~ 18613717 (+) False LOC103028566
XM_007251809.3 mRNA upstream 309398 18604047 ~ 18613717 (+) False LOC103028566
XM_007251806.3 mRNA upstream 328329 18583019 ~ 18594786 (+) False LOC103027397
XM_007251820.3 mRNA downstream 46366 19196493 ~ 19232951 (+) True tgfbr2
XM_022673723.1 mRNA downstream 104074 19254201 ~ 19320340 (+) True LOC103035958
XM_007251829.3 mRNA downstream 279531 19429658 ~ 19437684 (+) True LOC103034694
XM_007251827.3 mRNA downstream 292179 19442306 ~ 19444740 (+) True tmem42
XM_022673725.1 mRNA downstream 314203 19464330 ~ 19475176 (+) True ebag9
XR_002650449.1 other upstream 309398 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 431043 18491680 ~ 18492072 (+) True G91760
TU123393 other upstream 501852 18400488 ~ 18421263 (+) True G91748
TU123391 other upstream 501852 18417609 ~ 18421263 (+) False G91748
LOC111193340 other upstream 561998 18358923 ~ 18361117 (+) True LOC111193340
TU124129 other downstream 1669023 20819150 ~ 20821390 (+) False LOC103032252
TU124179 other downstream 1791299 20941426 ~ 20945506 (+) True G92350
TU124348 other downstream 2119038 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 2125036 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 2125036 21275163 ~ 21352003 (+) False G92462

Expression Profile