RNA id: TU123591


Basic Information

Item Value
RNA id TU123591
length 1309
lncRNA type intronic
GC content 0.42
exon number 5
gene id LOC111193344
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 19262101 ~ 19267604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGAATTAAAAGTGATGTACTTAGCTGAACACATCACTAAGCTAGCTGCAAtgacaaaatattcaaataaacagaaatatttaaccaaaataacaaataaattcttacacaaaacaaactaaaaagtaaacaattagaactaaaaaaaagaagtaactaAACAAAACCCACCTACAGACCCAAACAAATAAACGCCAcaataaagcaaacacaacCCTGATAGCAGACTACTCCGATCCGGATCCGTTTTACCTCCGGCAGATCCGCGCTACAGTCAGGTCTGTTTAGTGGATCTGGTACGGCTTCACTCCGGGTTCGGGTTATGATTGTGACTCACGTTCAGATCCGTTTTACTGACGGTAAATCCGCATAACAGTCCGTCTCATTTCACGCCTTCCATATGACTTCGGCACGGAGTCAGATACCAGATGTGAGTTCAGTGTCAGTTCAGTGTCGTTTTGCGGATCCGGGCCGCATCGGCGGAGCGGCACAGGAGCGGGAGAAATTCAAACTCAGCGCGAGGACCAACTGACATCTGCTGAATCTGCGCTTCAGgtgTAATCATTTACCCATCAAATCACCTAACAAGGATCAGCCTGGATCCTAACAGTACTTGATGCACTGAGCAGTGACATTATACATAGAGTAGTTAAGGATTTGGTATCCGCAAAATGGTTCGAGGTCCTCAGCCCTCGCCTCCCCCAGCACAGAGGAAAACTACCAAGGGCGGTACTCTCATTATAGGAGATTCAATTGTTAGACATTTAAAAGTATCTAAGAGTAATGGCATAATTTCATGTCTTCCAGATGCTTGCATGCTGGTAGTCGGCAAGCGGCTCCCTGGGGCGCATTGCCAAAGCAGGAACCCCGGCACCATCGCCCTCCACGTGGGGATGAGCTTTCGGGAGCGACCGGCCCCGTTCCACAGAGACAGGCTTCTCTCTGTGAACATCGAGGCGGTGCTACGCTGAGACTGACTGTCTCTACCCAGTCACACCAGCCAAgCTGCACTGTAGTGGTGTTAAGTGTCCAAGAATGCTCTCATCAGTGGAGGCACAGCTGGCTGCAAAAAACGTCTGTGTCTGCATGTTTATATTATGTGAATTAAAaatggttttattattaaaataattgtattaatgccTGTtgatttataaattgtttaattgaaatcaaattttatttaagtagcttaattaagtattgcatttataactgatggtattttatttaattagcttaagtattgcatttataagtgatggtattttattgaattagcttaattaatattgcatttataagtga

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123570 lncRNA upstream 120144 19072677 ~ 19141957 (+) True G91884
TU123565 lncRNA upstream 252641 19008463 ~ 19009460 (+) True G91881
TU123548 lncRNA upstream 427998 18833448 ~ 18834103 (+) True G91867
TU123531 lncRNA upstream 448704 18810861 ~ 18813397 (+) True G91853
TU123508 lncRNA upstream 522725 18728707 ~ 18739376 (+) True G91837
TU123601 lncRNA downstream 56092 19323696 ~ 19336335 (+) True G91906
TU123600 lncRNA downstream 66938 19334542 ~ 19341265 (+) False G91906
TU123615 lncRNA downstream 115302 19382906 ~ 19389270 (+) True G91919
TU123711 lncRNA downstream 170779 19438383 ~ 19441433 (+) True G91997
TU123736 lncRNA downstream 219763 19487367 ~ 19492757 (+) True G92007
XM_007251820.3 mRNA upstream 29150 19196493 ~ 19232951 (+) True tgfbr2
XM_022673722.1 mRNA upstream 111974 18876206 ~ 19150127 (+) False rbms3
XM_007251818.3 mRNA upstream 111974 18923113 ~ 19150127 (+) False rbms3
XM_007251817.3 mRNA upstream 111974 18923115 ~ 19150127 (+) True rbms3
XM_022673720.1 mRNA upstream 111974 18923115 ~ 19150127 (+) False rbms3
XM_007251829.3 mRNA downstream 162054 19429658 ~ 19437684 (+) True LOC103034694
XM_007251827.3 mRNA downstream 174702 19442306 ~ 19444740 (+) True tmem42
XM_022673725.1 mRNA downstream 196726 19464330 ~ 19475176 (+) True ebag9
XM_015606469.2 mRNA downstream 196726 19464330 ~ 19475176 (+) False ebag9
XM_007251830.3 mRNA downstream 236842 19504446 ~ 19510876 (+) True LOC103035022
XR_002650449.1 other upstream 648384 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 770029 18491680 ~ 18492072 (+) True G91760
TU123393 other upstream 840838 18400488 ~ 18421263 (+) True G91748
TU123391 other upstream 840838 18417609 ~ 18421263 (+) False G91748
LOC111193340 other upstream 900984 18358923 ~ 18361117 (+) True LOC111193340
TU124129 other downstream 1551546 20819150 ~ 20821390 (+) False LOC103032252
TU124179 other downstream 1673822 20941426 ~ 20945506 (+) True G92350
TU124348 other downstream 2001561 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 2007559 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 2007559 21275163 ~ 21352003 (+) False G92462

Expression Profile