RNA id: XM_007251809.3


Basic Information

Item Value
RNA id XM_007251809.3
length 2248
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC103028566
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18604038 ~ 18613717 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGTGGTTGTTTAAAAGTTGTGTATTGCATCATCgacattaaaatatgttatgCCAGAATAATTGAACCtttattcaatgttcttttgttcttttatatCTGAGTTGTCACAATGTTGTCAGAACGTACAGACATGTTCTGAGGTAAACAATAGGCTACAGATAGTAAACAGAGACAGTGTACAGAGAGATGAATAAGAGGCAGGGTGAGCTAGTaccagcctgtgtgtgtgtgtgtgtgacagtggaTGATGCTGTAGTGTTGTGGGGAGGAGGAATTCCTGCGCTGGATGAATGGGGCACTTGAAGCGTGAATGGCCCTCCCTCGCTGCTGCAGCTATGGCGGCGCCCGGACCGCAGCCTGATGCGGAGCTGCGGGCTCTCAGCGCGCTCGACCCTCTTTCAGCCCGGGAAAAACGACCTGCTCCGGCCAGCGTGGATGTGGAGGAGGTGGCGGAGCTGCTGGGGAGCTTTCTGGACTCTGAGAACGGCCCCTCTGCCGAGACCCCTGCGGTCAAACCCACGGAGGAGCTGGTCAGCGGCTTCGACGAGAAGTTAAAGGCGTGCTTTGGACATTTTAGCTCTAAACCTGCCGTAAAAGCGGGGGTAGAGCCTATCACTGAGGACACCTTCCTGAAAAACGacgaCATCTGGAATGCATTGACAGATAATTATGGGAATATCATGCCGGTGGACTGGAATCAGTCTCATGCTCGCTCACTTCACCTCTCCACCCTGAACATTGAAGACAGGCCGGTGAGTAATGTGAATTTGGATGTGTCTGATGATGAGGAGATGAGGGAACAGATGGATATGCACTCTATCATTGTGTCCTGTATCAACGAGGAGCCCCTCTTCACTGCTGAGCAGGTAATTGAAGAAATAGAGGAGATGATGCAGGACTCACCAGACATGGAAACTGAACACACGTCTCATTCTGATCAGATAGAAAGATACAGAAACAACAGCCACACCAACGAGGACAGAGTGAGAAACCTCAGTGTTGCAGAACTGAATGAGTtactggaggaggaagagactGCTGTCCGCCGATACTCTGAGGAACTGGTCCAGCATCTGGCTATGAGGGACGAGTTGGACTTTGAGAAGGAGGTGAAAAATAGTTTCATTTCCATGCTGATAGATGTACAGAACCGACAGAAAGAACACAGAGAACAGatgaaaaagaagaggaaattAAAGAACGGTGGCGGATCCCACCACGGTAGAGCAGAAAGGATACCAACAAGTCGCTTCAGCATGGAGAGTATTTCCTCTGCCATTCAGAATGGCTTCCgacaaacttttggacacagTGTTGGGGAGAAACAGTATCTCACTACAGTTATTCCTTATGAGAGGAAAGGAGGTCCTCCATCAGTTGAAGATCTTCAGGTTCTTACAAAAATTCTTCAGGCTATGAGGGATGACAGTGACAAAGTACCCAGTCTTCTTACAGATTACATTCTTAAAGTACTCTGTCCCTCCTAAAATGATGGTGAGACTTTTGCACTTCTGAGTCCACTTTGACAGAGGACTTACTGAGGATGATCAGGTGGACTTTGGCACTGTGACTCATCGCAGGATTGATTACTCAGATTGATATTACATCTTTTCTTAATGAAGGCTGTATATTCCCTTAATTGACATGCTGGATTATATTACTGCACTCTAATAGTACTGTAAGTGAAAGGATGTTGAATACAGTGCAAGCAAAACATATctaaagcatttaaaacatgtaaGTGCACTTAAAACACCTCTGGAACATGTTCCAAAGTCTTGATATGCAGCAGCATTTATCTGTCTTGTTTGATTCtgctttttttgtgtaaacacCACACTGTCTTTCTGGCTCACAGAAATGTGGCTTCAAGGGGTGTTGTAGTTCCAATCCTAAGGGTTGagtagtttttttctgtatcttgAGAACAAACTCTTGTTGTGTTAATGAGTGTTGCTGGTCTCAAATAACATGCTGTATATCTTTGGAGAGAAATAATGATTAATTCATTAACTGATTTCGTTTGATATATTGATTTAAACAACTGTCAACAGTGATGTCACTGTGAAAACACttggtatttatttatcattatttagaGAATGTCAGAATTCAAAATGATGTCATATGaagaattattctgtaattataataatggtATTGCTACATTACAGATATTACTATTTTACTGTTTGTAAATTCAATTTCTGCTTGTAtttctgtttaataaattaacattaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123417 lncRNA upstream 97012 18494381 ~ 18507035 (+) False lyplal1
TU123365 lncRNA upstream 249499 18351934 ~ 18354548 (+) True G91729
TU123363 lncRNA upstream 253582 18348027 ~ 18350465 (+) False G91728
TU123355 lncRNA upstream 278324 18325460 ~ 18325723 (+) True G91723
TU123353 lncRNA upstream 327650 18276156 ~ 18276397 (+) True G91721
TU123507 lncRNA downstream 113892 18727609 ~ 18727825 (+) True G91836
TU123508 lncRNA downstream 114990 18728707 ~ 18739376 (+) True G91837
TU123531 lncRNA downstream 197144 18810861 ~ 18813397 (+) True G91853
TU123548 lncRNA downstream 219731 18833448 ~ 18834103 (+) True G91867
TU123565 lncRNA downstream 394746 19008463 ~ 19009460 (+) True G91881
XM_007251805.3 mRNA upstream 9261 18583015 ~ 18594786 (+) True LOC103027397
XM_007251806.3 mRNA upstream 9261 18583019 ~ 18594786 (+) False LOC103027397
XM_022673713.1 mRNA upstream 22450 18553622 ~ 18581597 (+) False adcy3
XM_015606459.2 mRNA downstream 188008 18801725 ~ 18808281 (+) True LOC107197682
XM_022673722.1 mRNA downstream 262489 18876206 ~ 19150127 (+) False rbms3
XM_007251818.3 mRNA downstream 309396 18923113 ~ 19150127 (+) False rbms3
XM_007251817.3 mRNA downstream 309398 18923115 ~ 19150127 (+) True rbms3
XM_022673720.1 mRNA downstream 309398 18923115 ~ 19150127 (+) False rbms3
TU123412 other upstream 111975 18491680 ~ 18492072 (+) True G91760
TU123393 other upstream 182784 18400488 ~ 18421263 (+) True G91748
TU123391 other upstream 182784 18417609 ~ 18421263 (+) False G91748
LOC111193340 other upstream 242930 18358923 ~ 18361117 (+) True LOC111193340
LOC103024770 other upstream 249158 18354163 ~ 18354889 (+) True LOC103024770
TU124129 other downstream 2205433 20819150 ~ 20821390 (+) False LOC103032252
TU124179 other downstream 2327709 20941426 ~ 20945506 (+) True G92350
TU124348 other downstream 2655448 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 2661446 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 2661446 21275163 ~ 21352003 (+) False G92462

Expression Profile