RNA id: XM_007251805.3


Basic Information

Item Value
RNA id XM_007251805.3
length 4869
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC103027397
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 18583015 ~ 18594786 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCGCTTGAATGCAGCGTTTAAAGCTCAAGGTTGTTCAGGGCTTCCCGGGTGACGTCACTGCGCACAGACGTCCGTCATGGTGCTGCAGCTGTTTCGCTGACAAACAATAACAAGCCGCCAGAAAAGCCGAGCTAAAGCAGGCCGACTCTCCCGCAGCTCCTGACGCTTCGTCCGCGCGAGCCGAGACCGCGGACGGTTTGTCAGAGTCGCTCTCGGCGAAGTAACTCTGGCCTCCGCTGcctcccccgcctcctcctcgtcctccgACTCGGCAGCCGGCGGAGCGTCGCCGCCGCGGAAGAAAGCCCGAGCGCGGGCGGCGGAGGGAGCAGGAGATAGCGGGGCTTCTCTGGCGAGCGCAGGCCTAACAGCTCTTGTTTTTGGTCTCCCGTCTTTCTCTTCCGTCCTGTATCCCCGCTCCGGCGCAGAGCCCCCTGACACCAACCCCCACAGAGTCGCTGGCCTCAGCGGTGCTATCATGCAAGCCAACGGAGCAGGACAGGGGCAAGACCCAGAGCTGCCATGCCTGAACAGCGCCCAGAACGGAGAGTCGTCCGCGGCCGGCGGAGCGCACTCGAACGGGCTGCTGCTGGCCACCGCCGCGGACGGCGCCGCTACCGTCGGTGTCACCGCGGCAAACAACGGCCTCCAGCCCCCGGGCAGCTCCGCTGCTTCGGCCGCCACTTCGACCTTGGGTCCAGAAACGGGCTCCagcatgaagaagaagaaacggTTGTCAAAAGCAGACGAAGATGTCATCCGCCTGATCGGGCAGCATCTGCACGGGCTAGGGCTCAAtcagACAGTGGACTTGCTGATGCAGGAGTCGGGCTGTAGGCTTGAGCATCCTGCTGCCACAAAATTCCGCAACCATGTCATGGAAGGAGAATGGGACAAGGCGGAAAGTGATCTAAATGAGCTGAAAACATTGATGCATTCACCAAACGCTATTGTGCGGATGAAGTTCCTGCTCCTGCAGCAGAAGTATTTGGAGTATTTGGAAGATGGAAAGGTCTTGGAGGCATTGCATGTGTTAAGAGCAGAATTGACTCCTCTGAAGTACAACACAGAGCGCATCCACGTCCTCAGCGGGTATCTGATGTGCAGTCATTCTGATGATCTCCGAGCCAAGGCTGAGTGGGAGGGAAAAGGAACATCCTCTCGTTCGAAACTGCTTGACAAACTCCAGATGTCATCATACCTGCCCCCTTCAGTGATGCTGCCACCTCGCAGGCTACAGACACTTCTGCGTCAAGCAGTGGAGCTGCAGAGGGATCGCTGCCTATACCACAACACCAAACTTGACAGTAATCTGGATTCTGTGTCTTTGCTGGTGGACCATGTTTGCAGCAGGAAACAGTTCCCGTGTTACACCCAGCAGATCTTGACAGAACACTGCAATGAGGTCTGGTTCTGTAAATTCTCCAATGATGGCACCAAATTGGCCTCTGGATCTAAAGACACTACAGTTATTATTTGGCATGTTGACCCAGAGACACACCTGCTGAAGCAGCTGAAGACTCTGGAAGGCCATGCATATGGGGTGTCTTACCTGGCCTGGAGCCCAGATGACGCATATTTGATAGCCTGTGGCCCTGATGACTGCTCTGAGTTGTGGCTCTGGAACGTTCAGACTGGGGAACTGAGGACTAAAATGAGCCAGTCCCATGAAGACAGCCTGACAAGTGTAGCCTGGAATCCAGATGGCAAGCGCTTTGTCACTGGAGGCCAAAGAGGCCAGTTTTACCAGTGTGATCTAGATGGAAATCTGTTGGACTCATGGGAGGGAGTTCGTGTTCAGTGCCTGTGGTGCTTAAATGACAGCAAAACAGTGTTGGCTTCAGACACGCACCAGCGTATCCGTGGCTACAACTTTGAAGATCTGACTGACAGAAACATTGTACAGGAAGATCACCCTATAATGTCTTTCACCGTGTCGAAGAATGGCAGATTAGCTCTATTAAACGTTGCAACTCAGGGAGTTCATTTGTGGGACCTACAGGACCGAGTACTGGTGAGAAAGTACCAAGGTGTGACTCAAGGCTTCTATACCATCCACTCCTGTTTTGGAGGCCATAATGAGGACTTCATTGCCAGTGGGAGTGAAGACCATAAAGTGTACATCTGGCACAAGCGCAGTGAGCTGCCAATTGCGGAGCTGACAGGCCACACACGCACTGTGAACTGTGTGAGCTGGAACCCCGTCCTGCCAGGACTCATGGCCAGCGCCTCTGACGATGGCACTGTCAGGGTCTGGGGTCCTGCTCCCTTCAGTGACACCCAGGAGATAGAGGGGCTTAGCGAAATCTGTAGCATGGACAGTTGATGTTGACTATGGAGCAAAATGAAAATCAAGAGTGATGCTCACTATGAACACTTCAAGAAAATAAGGATGAATGAAGTTTAACAAAAAACTTGAGGTTTACCCCACCCCTGCCTGCCCCTGTAGCAGTGGAGAGGCTAAGCAAAAGCAGAGATGCTGGACCACTTGAATGAAACTCTCCCAGCAGCTGCTGGCCTTCCCCCTGCAACCACAGACATGCGTGGTGTCCCTGTTTAGGTCGCATCGCGTGGCCCTTACTGAGGAGGCTGAATGGCCTCAGACTGACGTCTGTCTCCTCGTCTGCCCTCCACACTGCAGTTCTCTGAGGAGCTGCAGCTTCACAAACCACaccaaaacaaataattatttattactgcTATTATTTATTGTTGTAAATCAGTCAAGGCCTCTCTGGCTTGAGTTGTAGTGATGGTGTGCTTTGTTCTTTACGATATTCAGTCAGTGAAGAAAAGTGGGTTtatttcgtttgttttttttatgattatttttatcaGTTCTGCTGGTATGATGTGCAAGAAAATCCCCTCTGCATGTGATCATGTGATGGGTGTGAGGGCAGCATGGGTTTGGAAATGGAAATATTGGAGGGGTTCTAGAGATGGTGATCATATCCTTTTTCCGcattaacttttttcttttttcagccaCCTGTGTGAATGTAAGCCTGAGCGAGTTTTTTCACCAGCAGAATGTACCCGTCTTGTTTTTTCGCCATGTTTAAAACTatgaaaataatcattttaattgaCTGAATTTACAGACACTTTTAACAGTGGAATCAGATCCATTTCGGTTTATAAGGAAGATCTTAAAATGATCTTGATGTccttttttctccattaaagaTTGTGGTACTTTATATAAGGAATCTGAATCTcgtttgtgtatgtatgatgGTAAGTATAGAAGAACTTGACACTGAGGGGATGAATAATGTTTCTCGCTACATCATTGCTTGCCATGACCCAAGTTAAGATAGGAAGTGTAATGTTTAATGAATTGAGCTTGCTTGAATCGTTTAATCTGTCAGAAAGCAGCGACTAAACCAACATATAGAGACTTGAGCTTTCAGATTCGGGCCCCTTGAGTGTTCTCACTTACCAGCATGCTTCTTTGTTCTATGTTGTCACCCTTGCTGACAGCATATATAAGACCTTTGAAACTTACAAAGTTGTGAGCACATGTAAATATTGACCATCTGTATTGCAAGAATGCGAGGAGTCCTTTCCTTTTGGGTCCTTTTGTAAATGGCTACTAGATGTTGGTCATATCTGGAGTGTTATTTCTTTGTTAGTTTTCTTTTGGAGCAGTAAGTACAAAAAGGTAAAGCTTTGTCAGTGGATAAATGAATACATGGGCTGTTGGCTTGAGAAAAATCATGTAAGATAGGGCTTTAGTGGATGGCTCAGTGTTTTGGGGCAGTTGGGTAATGGTCAATATTGTAATGGTCAGTATCCATACAGTTTAAAGGTAAAGTAAGCAAGCTAGTTCATAATTAGGCCTTCCAGTCATGtcccttttattttttgattttcaatcaagttttgtgtgtgtatttacttTAACCATATGTTCTAATcccttgtttcttttttttaatcatgatttcttatttcttatgtctttgatttattgtgtttttttatgatcttCAGCTATACCATTTATAATTCTACATCACAAAggtcagatttttttcttctttggaGGGGGGTATctgaatttttttgtttttctaaagtTATATCGATCCTTTGTTTTACTCATTGTTTCTCCTGAATTATGATATAAAGTATTTCATGGGAAGTGGCCTCTTAACTACTTTTTTTCTATGTCATGTTCTTATACTTGctcattgttttattcatttttacaccCAGGTGTAGTGTGCAAATAATATTGAGGTATTCAGAGTGTTACAGTCTGGCCATCAAGCATAACAAACTTTGCCTACTATGATTTGCTTTGTAATatgtgctttgtgtgtgtgtgtgttatggcaTGTATTATAAGACTGGTCAAGAGAATCATTTAGGCTGAGCGTCCCTTACCCCTCAGATGATGttatttcttttccttttcttgcATCAGGTAAGAAGCTCCTCTGTACAGGTTATATCCCTACACTCACCAGCCAAACCTGTTCAGTCACTGAGGAGTGACACGCGcgcacacatacatgcacacacctTAGTACCTgttaaaaatactgaaatttcACCAATGTTATGTTCAATGTTCTGCTTATGCAAAATGACCTGTTTTCCTTTGGTGACTTAGTATTTCATTTGAGGGCTTGGTTTTGCTTTCCTGTGCTGTGAAAGCATGGCTGTGAGCCTGCTCGTTATCCACAGGGGCCCAGGGTGGAGATACCAGGCAAACACATGGTTTTGCTTCAGGTTCAGAAGGGTCTGTTTTGCATTTAACTGTGTTAATATTCTAAGTGATTGTACTGTTATGTAATGTGTAGGAGAAGTCTTACGTATGCATATTTTCAATAAAGCATTCAGGGTTTTAAAATAG

Function

GO: NA

KEGG:

id description
K22382 WDR26; WD repeat-containing protein 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123417 lncRNA upstream 75980 18494381 ~ 18507035 (+) False lyplal1
TU123365 lncRNA upstream 228467 18351934 ~ 18354548 (+) True G91729
TU123363 lncRNA upstream 232550 18348027 ~ 18350465 (+) False G91728
TU123355 lncRNA upstream 257292 18325460 ~ 18325723 (+) True G91723
TU123353 lncRNA upstream 306618 18276156 ~ 18276397 (+) True G91721
TU123507 lncRNA downstream 132823 18727609 ~ 18727825 (+) True G91836
TU123508 lncRNA downstream 133921 18728707 ~ 18739376 (+) True G91837
TU123531 lncRNA downstream 216075 18810861 ~ 18813397 (+) True G91853
TU123548 lncRNA downstream 238662 18833448 ~ 18834103 (+) True G91867
TU123565 lncRNA downstream 413677 19008463 ~ 19009460 (+) True G91881
XM_022673713.1 mRNA upstream 1418 18553622 ~ 18581597 (+) False adcy3
XM_015606466.2 mRNA upstream 1418 18555541 ~ 18581597 (+) False adcy3
XM_007251807.3 mRNA upstream 1418 18555542 ~ 18581597 (+) True adcy3
XM_007251801.3 mRNA upstream 82395 18494359 ~ 18500620 (+) True lyplal1
XM_007251800.3 mRNA upstream 166290 18381696 ~ 18416725 (+) True tgfb2
XM_022673716.1 mRNA downstream 9252 18604038 ~ 18613717 (+) True LOC103028566
XM_022673714.1 mRNA downstream 9255 18604041 ~ 18613717 (+) False LOC103028566
XM_007251809.3 mRNA downstream 9261 18604047 ~ 18613717 (+) False LOC103028566
XM_015606459.2 mRNA downstream 206939 18801725 ~ 18808281 (+) True LOC107197682
XM_022673722.1 mRNA downstream 281420 18876206 ~ 19150127 (+) False rbms3
TU123412 other upstream 90943 18491680 ~ 18492072 (+) True G91760
TU123393 other upstream 161752 18400488 ~ 18421263 (+) True G91748
TU123391 other upstream 161752 18417609 ~ 18421263 (+) False G91748
LOC111193340 other upstream 221898 18358923 ~ 18361117 (+) True LOC111193340
LOC103024770 other upstream 228126 18354163 ~ 18354889 (+) True LOC103024770
XR_002650449.1 other downstream 9252 18604038 ~ 18613717 (+) False LOC103028566
TU124129 other downstream 2224364 20819150 ~ 20821390 (+) False LOC103032252
TU124179 other downstream 2346640 20941426 ~ 20945506 (+) True G92350
TU124348 other downstream 2674379 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 2680377 21275163 ~ 21352003 (+) False G92462

Expression Profile