RNA id: TU123257


Basic Information

Item Value
RNA id TU123257
length 341
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G91633
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 17677865 ~ 17678205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttcttttgggaATGTCCAGTTGTTGTAAGGTTTTGGACTTTTGTGATAAAGTTTATTTCTGAGCTGTTAGATATAAAACTACAATTATGTCCAGCTGTTTAGTTATCATGTGATGCTtcggcacggtggcttagtggttagcacgttcgcctcccagcactggggtcttgggttcaagtccctatctgggtggagtttccatgtcctccctgtgtctgcgtgggtttcctccggggactccagtttcctcccacagtccaaaaacatggagatcaggtaaattggatactctaaattgcccagaaaaattgaatactctaaaaatttatctggtgtg

Function

GO: NA

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123252 lncRNA upstream 18754 17657096 ~ 17659111 (+) True G91628
TU123241 lncRNA upstream 49196 17627288 ~ 17628669 (+) True G91621
TU123205 lncRNA upstream 91668 17585501 ~ 17586197 (+) True G91599
TU123202 lncRNA upstream 102081 17574544 ~ 17575784 (+) True G91597
TU123121 lncRNA upstream 168887 17508750 ~ 17508978 (+) True G91547
XR_001518706.2 lncRNA downstream 234906 17913111 ~ 17925434 (+) True LOC107197683
TU123320 lncRNA downstream 253270 17931475 ~ 17931750 (+) True G91690
TU123338 lncRNA downstream 381973 18060178 ~ 18090208 (+) True G91708
TU123353 lncRNA downstream 597951 18276156 ~ 18276397 (+) True G91721
TU123355 lncRNA downstream 647255 18325460 ~ 18325723 (+) True G91723
XM_007251791.3 mRNA upstream 40255 17634185 ~ 17637610 (+) True dnali1
XM_022673360.1 mRNA upstream 229934 17441118 ~ 17447931 (+) True rcc1
XM_007251759.3 mRNA upstream 239666 17400821 ~ 17438199 (+) False LOC103041872
XM_007251793.3 mRNA downstream 29530 17707735 ~ 17753547 (+) True rspo1
XM_015606461.2 mRNA downstream 29530 17707735 ~ 17753547 (+) False rspo1
XM_022673708.1 mRNA downstream 182375 17860580 ~ 17865075 (+) True utp11
XM_007251797.3 mRNA downstream 690566 18368771 ~ 18374278 (+) True rrp15
XM_007251800.3 mRNA downstream 703491 18381696 ~ 18416725 (+) True tgfb2
XR_002650442.1 other upstream 1258485 16395214 ~ 16419380 (+) False trim71
TU122481 other upstream 2394810 15281509 ~ 15283055 (+) False LOC103025288
TU122479 other upstream 2398701 15276253 ~ 15279164 (+) False LOC103025288
TU122457 other upstream 2461357 15160215 ~ 15216508 (+) True alg14
TU122125 other upstream 3403167 14272064 ~ 14274698 (+) False eif1b
TU123306 other downstream 233696 17911901 ~ 17912443 (+) True G91678
LOC111193302 other downstream 669819 18348024 ~ 18350624 (+) True LOC111193302
TU123361 other downstream 669822 18348027 ~ 18361095 (+) True G91728
LOC111193341 other downstream 673758 18351963 ~ 18352643 (+) True LOC111193341
LOC103024770 other downstream 675958 18354163 ~ 18354889 (+) True LOC103024770

Expression Profile