LOC111193354


Basic Information

Item Value
gene id LOC111193354
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 25316804 ~ 25327096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673824.1
ACAGAGGGCGATACAGCACCAGTTCAGCACAAAGACAGTGAAAGAAGAACACAGATACTGgtggaagaagaggaggattcAGGAACTGGAGGagtttataaactctgatgatattttacagtatttctcTCTAAACTGCGGTTTAAATTAGGCTCGGATTATGGCGAATGAGTAGCCAGAGTGTATGTGGAGCACAGTGAACAGGTTGGAGAGCTGCAGCGGTGACTGTAACACAGCACGGGCTGAGCGGAGCTGATGTGGGTTTACAGTCTGACACCGGATGCGGGTTAACCTTCTGTTCTATAGCTTTCCATATGAAGATTTTCTCCCTGACCCTTTTCACTGACTGACCTGAATGTTATTTTACGCCTTATTGTGGTCAGCTGGGTGGCCTACAGACACAGAGAAGACTCATCAGTAAAATGGGTGATTGGACTCTGAAGACAGAGGATGTAAAACATGTCCTCCAAGTGGACATTAAAGCTGAGCAAGAAGATAATGAATCTCACTGTAAACTGGAGTGTAAGGACTTCAACATATCTGGAGCGTGTAGTCTCAAATCTGAGTCTTTACCAGGGATTGAGGAGTCATTTGCTGAAAATGACATTGACTCAATCGAATTGGACTACGTGAAAGTGAAGGTGGAGGATCCAAATGATCTGGAGTATATATTAGATAATCAACTGTCAAATGACTCAGCTCCAGTATTCTATGAAGAACCGGAGAGATACTATGGAAGCAGTCAAGATatatctctctccatcacttcTCCGGTAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGAGATGCTGATCCGGAGAGGAGGCAGAAATATCTACAGTATGAGCGTCAGAGATGGAGACGGGATTTACAGCAAGGGAAGAAGAAGATTATTAATGATCTAAGTGAGCTAGAGAGGATTCAGCAGCGTTACAAGTGGAGGAAGCAATACATGAAGAGAAAAGTGATGGCTGATGTTGGGACGCACAGTATGGACACCCCCATCATTCTGTCCAACATCCAGAGCAGCATTCAGGATCTTCAAGATAGATCTGTCTCTATCATGGCTCCAATAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGGGATGCTGATCCTGAGAGGAGGGAAAAGTACCTACAAGATAGATCTGTCTCTATCATGGCTCCAATAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGGGATGCTGATCCTGAGAGGAGGGAAAAGTACCTACAAGGTGAGCGTCAGAGATGGAGACGAGATGTAGAGCAAGGGAAGAAGAAGACGATTAGTGATCTAAGTGAGCTATGGAAAATGGAGCAGCTTAACAAGTGGAGGGAGTATCATTCTCTTCACCATCCAGAGCAGCAGTCGGGATCTGCGAGATCAGAAAACAACATTGAACAAGCTGGTGATGAGCTTTAAGTGGCCCTCAGAGAAACATCTACAGCAGTGAAGTTGTTTTATGTTGCAAGGGGAACAGTGCAGCAGGCAATGGAATGTATACCTGGCCGGATTCCCCCCGTGCCTTTCACAGTCAAAACCCACCAGTTGGACACATTCACTCTAGGAGAGATTTTTTACCGGCAAATCAGTTGCATTTTCTCCACACCAAAGCAGCTGAGATGTCAGTGCTTCTTTTAAAAAGACTCCAAAATGTGCAGACAATAATCAATTGCCCAGGAAAgaggagaataaaaaaaaacatgccctTGTACAGTGCATGCAACATGCCAGTTCCAACAGCTTTTTCTGGCTTGCAAAAGATGAGGTACGTCATGTGGTACCTCTCCAATAAGTACTCAGAATCATTCAAGCATCGCCAAATATGACATCCTGTCTGATGGCTATCCAGAAAGATTTATGGAAGTGACTCTCCCAGTCTATGTCATTATACTTtgcaaatattaattatttgatcCATTTTTGTATGTTCTAATATTGGTTGTACCTTAAAAGTGTACCTTAATGAGAAAAGAATTAATCAAcgttttaaatgtatatttaaaatactgaggattctgtttacattttaaacagtcagTATTCGTTCAGCTTCATGTAAGCATAAATATTTGCACTTTTTCCAGCATGCTGTATTAATAAAGCTTTTAATAAagatttttctatata
>XM_022673825.1
ACAGCACCAGTTCAGCACAAAGACAGTGAAAGAAGAACACAGATACTGgtggaagaagaggaggattcAGGAACTGGAGGagtttataaactctgatgatattttacagtatttctcTCTAAACTGCGGTTTAAATTAGGCTCGGATTATGGCGAATGAGTAGCCAGAGTGTATGTGGAGCACAGTGAACAGGTTGGAGAGCTGCAGCGGTGACTGTAACACAGCACGGGCTGAGCGGAGCTGATGTGGGTTTACAGTCTGACACCGGATGCGGGTTAACCTTCTGTTCTATAGCTTTCCATATGAAGATTTTCTCCCTGACCCTTTTCACTGACTGACCTGAATGTTATTTTACGCCTTATTGTGGTCAGCTGGGTGGCCTACAGACACAGAGAAGTTCTAGACTCATCAGTAAAATGGGTGATTGGACTCTGAAGACAGAGGATGTAAAACATGTCCTCCAAGTGGACATTAAAGCTGAGCAAGAAGATAATGAATCTCACTGTAAACTGGAGTGTAAGGACTTCAACATATCTGGAGCGTGTAGTCTCAAATCTGAGTCTTTACCAGGGATTGAGGAGTCATTTGCTGAAAATGACATTGACTCAATCGAATTGGACTACGTGAAAGTGAAGGTGGAGGATCCAAATGATCTGGAGTATATATTAGATAATCAACTGTCAAATGACTCAGCTCCAGTATTCTATGAAGAACCGGAGAGATACTATGGAAGCAGTCAAGATatatctctctccatcacttcTCCGGTAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGAGATGCTGATCCGGAGAGGAGGCAGAAATATCTACAGTATGAGCGTCAGAGATGGAGACGGGATTTACAGCAAGGGAAGAAGAAGATTATTAATGATCTAAGTGAGCTAGAGAGGATTCAGCAGCGTTACAAGTGGAGGAAGCAATACATGAAGAGAAAAGTGATGGCTGATGTTGGGACGCACAGTATGGACACCCCCATCATTCTGTCCAACATCCAGAGCAGCATTCAGGATCTTCAAGATAGATCTGTCTCTATCATGGCTCCAATAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGGGATGCTGATCCTGAGAGGAGGGAAAAGTACCTACAAGATAGATCTGTCTCTATCATGGCTCCAATAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGGGATGCTGATCCTGAGAGGAGGGAAAAGTACCTACAAGGTGAGCGTCAGAGATGGAGACGAGATGTAGAGCAAGGGAAGAAGAAGACGATTAGTGATCTAAGTGAGCTATGGAAAATGGAGCAGCTTAACAAGTGGAGGGAGTATCATTCTCTTCACCATCCAGAGCAGCAGTCGGGATCTGCGAGATCAGAAAACAACATTGAACAAGCTGGTGATGAGCTTTAAGTGGCCCTCAGAGAAACATCTACAGCAGTGAAGTTGTTTTATGTTGCAAGGGGAACAGTGCAGCAGGCAATGGAATGTATACCTGGCCGGATTCCCCCCGTGCCTTTCACAGTCAAAACCCACCAGTTGGACACATTCACTCTAGGAGAGATTTTTTACCGGCAAATCAGTTGCATTTTCTCCACACCAAAGCAGCTGAGATGTCAGTGCTTCTTTTAAAAAGACTCCAAAATGTGCAGACAATAATCAATTGCCCAGGAAAgaggagaataaaaaaaaacatgccctTGTACAGTGCATGCAACATGCCAGTTCCAACAGCTTTTTCTGGCTTGCAAAAGATGAGGTACGTCATGTGGTACCTCTCCAATAAGTACTCAGAATCATTCAAGCATCGCCAAATATGACATCCTGTCTGATGGCTATCCAGAAAGATTTATGGAAGTGACTCTCCCAGTCTATGTCATTATACTTtgcaaatattaattatttgatcCATTTTTGTATGTTCTAATATTGGTTGTACCTTAAAAGTGTACCTTAATGAGAAAAGAATTAATCAAcgttttaaatgtatatttaaaatactgaggattctgtttacattttaaacagtcagTATTCGTTCAGCTTCATGTAAGCATAAATATTTGCACTTTTTCCAGCATGCTGTATTAATAAAGCTTTTAATAAagatttttctatata
>XM_022673826.1
ACAGCACCAGTTCAGCACAAAGACAGTGAAAGAAGAACACAGATACTGgtggaagaagaggaggattcAGGAACTGGAGGagtttataaactctgatgatattttacagtatttctcTCTAAACTGCGGTTTAAATTAGGCTCGGATTATGGCGAATGAGTAGCCAGAGTGTATGTGGAGCACAGTGAACAGGTTGGAGAGCTGCAGCGGTGACTGTAACACAGCACGGGCTGAGCGGAGCTGATGTGGGTTTACAGTCTGACACCGGATGCGGGTTAACCTTCTGTTCTATAGCTACTCATCAGTAAAATGGGTGATTGGACTCTGAAGACAGAGGATGTAAAACATGTCCTCCAAGTGGACATTAAAGCTGAGCAAGAAGATAATGAATCTCACTGTAAACTGGAGTGTAAGGACTTCAACATATCTGGAGCGTGTAGTCTCAAATCTGAGTCTTTACCAGGGATTGAGGAGTCATTTGCTGAAAATGACATTGACTCAATCGAATTGGACTACGTGAAAGTGAAGGTGGAGGATCCAAATGATCTGGAGTATATATTAGATAATCAACTGTCAAATGACTCAGCTCCAGTATTCTATGAAGAACCGGAGAGATACTATGGAAGCAGTCAAGATatatctctctccatcacttcTCCGGTAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGAGATGCTGATCCGGAGAGGAGGCAGAAATATCTACAGTATGAGCGTCAGAGATGGAGACGGGATTTACAGCAAGGGAAGAAGAAGATTATTAATGATCTAAGTGAGCTAGAGAGGATTCAGCAGCGTTACAAGTGGAGGAAGCAATACATGAAGAGAAAAGTGATGGCTGATGTTGGGACGCACAGTATGGACACCCCCATCATTCTGTCCAACATCCAGAGCAGCATTCAGGATCTTCAAGATAGATCTGTCTCTATCATGGCTCCAATAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGGGATGCTGATCCTGAGAGGAGGGAAAAGTACCTACAAGATAGATCTGTCTCTATCATGGCTCCAATAAGTGCTGCTGAGAAACAGCGGAGATACCGCGCACGTCGGGATGCTGATCCTGAGAGGAGGGAAAAGTACCTACAAGGTGAGCGTCAGAGATGGAGACGAGATGTAGAGCAAGGGAAGAAGAAGACGATTAGTGATCTAAGTGAGCTATGGAAAATGGAGCAGCTTAACAAGTGGAGGGAGTATCATTCTCTTCACCATCCAGAGCAGCAGTCGGGATCTGCGAGATCAGAAAACAACATTGAACAAGCTGGTGATGAGCTTTAAGTGGCCCTCAGAGAAACATCTACAGCAGTGAAGTTGTTTTATGTTGCAAGGGGAACAGTGCAGCAGGCAATGGAATGTATACCTGGCCGGATTCCCCCCGTGCCTTTCACAGTCAAAACCCACCAGTTGGACACATTCACTCTAGGAGAGATTTTTTACCGGCAAATCAGTTGCATTTTCTCCACACCAAAGCAGCTGAGATGTCAGTGCTTCTTTTAAAAAGACTCCAAAATGTGCAGACAATAATCAATTGCCCAGGAAAgaggagaataaaaaaaaacatgccctTGTACAGTGCATGCAACATGCCAGTTCCAACAGCTTTTTCTGGCTTGCAAAAGATGAGGTACGTCATGTGGTACCTCTCCAATAAGTACTCAGAATCATTCAAGCATCGCCAAATATGACATCCTGTCTGATGGCTATCCAGAAAGATTTATGGAAGTGACTCTCCCAGTCTATGTCATTATACTTtgcaaatattaattatttgatcCATTTTTGTATGTTCTAATATTGGTTGTACCTTAAAAGTGTACCTTAATGAGAAAAGAATTAATCAAcgttttaaatgtatatttaaaatactgaggattctgtttacattttaaacagtcagTATTCGTTCAGCTTCATGTAAGCATAAATATTTGCACTTTTTCCAGCATGCTGTATTAATAAAGCTTTTAATAAagatttttctatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673824.1 True 2162 mRNA 0.43 7 25316804 25327096
XM_022673825.1 False 2156 mRNA 0.43 7 25316816 25327096
XM_022673826.1 False 2049 mRNA 0.43 6 25316816 25327096

Neighbor

gene id symbol gene type direction distance location
LOC103025221 NA coding upstream 5587 25293503 ~ 25311217 (+)
LOC103038714 NA coding upstream 24495 25282817 ~ 25292309 (+)
LOC111193304 NA coding upstream 37835 25272986 ~ 25278969 (+)
LOC103038083 NA coding upstream 48065 25243231 ~ 25268739 (+)
LOC103027368 NA coding upstream 74277 25210240 ~ 25242527 (+)
LOC103039026 NA coding downstream 8331 25335427 ~ 25345095 (+)
LOC111193305 NA coding downstream 25202 25352298 ~ 25353932 (+)
LOC103039346 LOC108436103,LOC107589405,LOC107724099 coding downstream 29386 25356482 ~ 25373171 (+)
LOC103026950 NA coding downstream 51274 25378370 ~ 25384965 (+)
LOC103026652 LOC108436076 coding downstream 59658 25386754 ~ 25400673 (+)
G93172 NA non-coding upstream 39085 25261138 ~ 25277719 (+)
G93180 NA non-coding upstream 109946 25206570 ~ 25206858 (+)
G93151 NA non-coding upstream 183518 25132031 ~ 25133286 (+)
G93146 mlf2,LOC106605851 non-coding upstream 261142 25046996 ~ 25055662 (+)
G93138 NA non-coding upstream 375195 24941218 ~ 24941609 (+)
G93354 NA non-coding downstream 7108 25334204 ~ 25334733 (+)
G93389 NA non-coding downstream 260098 25587194 ~ 25588046 (+)
G93387 NA non-coding downstream 261005 25588101 ~ 25589489 (+)
G93386 NA non-coding downstream 314974 25642070 ~ 25646500 (+)
G93388 NA non-coding downstream 320678 25647774 ~ 25653617 (+)
G93185 LOC105900568,LOC101883708 other upstream 3097 25311877 ~ 25313707 (+)
G93135 NA other upstream 351360 24914689 ~ 24965444 (+)
G93079 NA other upstream 608430 24698133 ~ 24708374 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 3964801 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 4371298 20941426 ~ 20945506 (+)
LOC103034726 LOC108436089 other downstream 940397 26267493 ~ 26392435 (+)
G93753 NA other downstream 1621367 26948463 ~ 26948879 (+)
LOC111193309 l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345 other downstream 2591996 27919092 ~ 27939933 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other downstream 3882182 29209278 ~ 29326025 (+)
LOC103044382 NA other downstream 3923937 29251033 ~ 29346842 (+)

Expression


Co-expression Network